PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0029ss00610.2

Common Name

LR48_Vigan05g132400

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 438aa MW: 48278.3 Da PI: 6.2663

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0029ss00610.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.2e-06	328	366	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Vang0029ss00610.2 328 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 366 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.589	317	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-11	327	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.88E-7	327	370	No hit	No description
SMART	SM00353	0.0025	328	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-10	331	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
LDSSTMADDQ FQASGNWWDT ARNVRYESGA SQSSSSAITN IANYAWQASD MADMKPRSSM 60 DSSSVVFHDS QNKLQPPDST TSTDPNLHMM GLGLSSQAMD WNQASLLTNF QQETGVELSQ 120 QVQWRSEKMF STESSTNEFK QVNRGFSLDQ SKFSPQYSSG DSTVTSQGLP SSNFQMDSSA 180 LYGTPSILQG LLGPDHNNQQ PSSFENRSMS FPYPTTYGLN SNNELIPSWS KVPQFLRGSP 240 PKQPPNNQLH FTNNAPFWNA SEAANFKDVR SSFFPSLQPP FSTPNFEVQS KNISEVRESG 300 TVGKKSGNEP APKRTRNETP SPMPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI 360 EYIKFLHEQV TALSTPYMKT GAPIQIQQNS GKCKETEGPK QDLRSRGLCL VPVSSTFPVT 420 HETTVDFWTP TFGGVSR*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

LDSSTMADDQ FQASGNWWDT ARNVRYESGA SQSSSSAITN IANYAWQASD MADMKPRSSM  60
DSSSVVFHDS QNKLQPPDST TSTDPNLHMM GLGLSSQAMD WNQASLLTNF QQETGVELSQ  120
QVQWRSEKMF STESSTNEFK QVNRGFSLDQ SKFSPQYSSG DSTVTSQGLP SSNFQMDSSA  180
LYGTPSILQG LLGPDHNNQQ PSSFENRSMS FPYPTTYGLN SNNELIPSWS KVPQFLRGSP  240
PKQPPNNQLH FTNNAPFWNA SEAANFKDVR SSFFPSLQPP FSTPNFEVQS KNISEVRESG  300
TVGKKSGNEP APKRTRNETP SPMPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI  360
EYIKFLHEQV TALSTPYMKT GAPIQIQQNS GKCKETEGPK QDLRSRGLCL VPVSSTFPVT  420
HETTVDFWTP TFGGVSR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0029ss00610.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017423220.1	0.0	PREDICTED: transcription factor bHLH123-like
Refseq	XP_017423221.1	0.0	PREDICTED: transcription factor bHLH123-like
Swissprot	Q8GXT3	9e-79	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A0L9UMF0	0.0	A0A0L9UMF0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SHZ0	0.0	A0A0S3SHZ0_PHAAN; Uncharacterized protein
STRING	XP_007149667.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-72	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]