PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0029ss00610.1 | ||||||||
Common Name | LR48_Vigan05g132400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 48278.3 Da PI: 6.2663 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 6.2e-06 | 328 | 366 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Vang0029ss00610.1 328 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 366 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.589 | 317 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.2E-11 | 327 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.88E-7 | 327 | 370 | No hit | No description |
SMART | SM00353 | 0.0025 | 328 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-10 | 331 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 438 aa Download sequence Send to blast |
LDSSTMADDQ FQASGNWWDT ARNVRYESGA SQSSSSAITN IANYAWQASD MADMKPRSSM 60 DSSSVVFHDS QNKLQPPDST TSTDPNLHMM GLGLSSQAMD WNQASLLTNF QQETGVELSQ 120 QVQWRSEKMF STESSTNEFK QVNRGFSLDQ SKFSPQYSSG DSTVTSQGLP SSNFQMDSSA 180 LYGTPSILQG LLGPDHNNQQ PSSFENRSMS FPYPTTYGLN SNNELIPSWS KVPQFLRGSP 240 PKQPPNNQLH FTNNAPFWNA SEAANFKDVR SSFFPSLQPP FSTPNFEVQS KNISEVRESG 300 TVGKKSGNEP APKRTRNETP SPMPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI 360 EYIKFLHEQV TALSTPYMKT GAPIQIQQNS GKCKETEGPK QDLRSRGLCL VPVSSTFPVT 420 HETTVDFWTP TFGGVSR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0029ss00610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423220.1 | 0.0 | PREDICTED: transcription factor bHLH123-like | ||||
Refseq | XP_017423221.1 | 0.0 | PREDICTED: transcription factor bHLH123-like | ||||
Swissprot | Q8GXT3 | 9e-79 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A0L9UMF0 | 0.0 | A0A0L9UMF0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SHZ0 | 0.0 | A0A0S3SHZ0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007149667.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20640.1 | 2e-72 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|