PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0029ss00060.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 278aa    MW: 30252 Da    PI: 9.9029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0029ss00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.31.2e-131658144
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykveP 44
                       lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk  P
  Vang0029ss00060.1 16 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-AIIAEVDLYKKYP 58
                       79****************************.88*******9776 PP
2NAM76.94.8e-245511866128
                NAM  66 kkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        kky++g r+nra++sgyWkatg+dk+vl++ ++++vg+kk Lvfy g+ p+g kt+W+mheyrl
  Vang0029ss00060.1  55 KKYPNGARPNRAATSGYWKATGTDKPVLTSgGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRL 118
                        79**************************9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.1651152IPR003441NAC domain
SuperFamilySSF1019411.26E-4710152IPR003441NAC domain
PfamPF023651.6E-2217118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MESTDSSTGS QQQPQLPPGF RFHPTDEELV VHYLKKKAAS VPLPVAIIAE VDLYKKYPNG  60
ARPNRAATSG YWKATGTDKP VLTSGGTQKV GVKKALVFYG GKPPRGIKTN WIMHEYRLAD  120
NKPNNRPPGC DLGNKKNSLR LDDWVLCRIY KKSNTHSTTG TTPGAMGASN SKAELSFVPT  180
MTHSSNTCKR TLSSLYWNDE DLAGTSSSNK RLNLESGDNN HGSVVRTDQD NGTATSIVTL  240
LNQLPQTPSL HQQSMLGSIG DGLLRTTYQI PGMNWYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-53101549170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0029ss00060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202626.11e-177NAC transcription factor 56
SwissprotQ9LD444e-83NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A151RBC41e-175A0A151RBC4_CAJCA; NAC domain-containing protein 18
STRINGXP_004487678.11e-139(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-85NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]