PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0027ss00510.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 318aa    MW: 35572.8 Da    PI: 6.7136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0027ss00510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11141187455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h + Er+RR+++  +f  L + +P +     kK++Ka +L++A++Y+k+L+
  Vang0027ss00510.1 141 DHIMSERKRRQELTRKFIALASTIPGL-----KKMDKAHVLREAINYVKQLK 187
                        6999***********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.104137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16141204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15142199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-10142191No hitNo description
PfamPF000103.6E-9142186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-12143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEENQWGKLS SHMEMEDEVL NECLCQTKTF DEEFLRDILQ QPQEGAAPDL NTFGETSCVI  60
RAGGGDKLMM KNSNSSMMNN LCGENKNKAT ASPTTYVLSF DKSDDPHSVS AWKDVSHKLP  120
LSSTRTNQGT KKIRSASESM DHIMSERKRR QELTRKFIAL ASTIPGLKKM DKAHVLREAI  180
NYVKQLKERV EVLEEDIQKN GAESSITITR SHLCIDDTNS DEWYGSNEAV PAEVEARVLG  240
KQVLIKIHCG KQKGILLKIL SQLERLHLLI STSNVLPLGS TIDITIIAQM GDEYKMVVKD  300
LVKELRQVAM MKSCVSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0027ss00510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027929891.10.0transcription factor bHLH18-like
TrEMBLA0A0S3SFC90.0A0A0S3SFC9_PHAAN; Uncharacterized protein
STRINGXP_007150796.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15398711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-46bHLH family protein