PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0026ss00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21322.4 Da PI: 9.2697 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.1 | 7.1e-21 | 2 | 33 | 3 | 34 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdae 34 ien +nrqvt+skRrngi+KKA+ELSvLCda+ Vang0026ss00110.1 2 IENPTNRQVTYSKRRNGIFKKAHELSVLCDAK 33 9*****************************97 PP | |||||||
2 | K-box | 59.8 | 1.1e-20 | 32 | 120 | 14 | 100 |
K-box 14 aeslqqelakLkkeienLqreqRhllGe..dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 a+++ ++l+kLk+ +++L+r++Rh++Ge dL++Ls+++L+ Le+++ +s+ kiR++K +++++ +++ +kk k+l++ n +L +l+e Vang0026ss00110.1 32 AKKMLENLKKLKDINNKLRRQIRHRIGEglDLDELSFQQLRTLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELKE 120 58899**********************9445789************************************************9888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.853 | 1 | 36 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-11 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-17 | 2 | 33 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-16 | 2 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.3E-18 | 32 | 117 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.617 | 32 | 124 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
LIENPTNRQV TYSKRRNGIF KKAHELSVLC DAKKMLENLK KLKDINNKLR RQIRHRIGEG 60 LDLDELSFQQ LRTLEEDMVS SIGKIRERKF HVIKTRTDTC RKKVKSLEQM NGNLLLELKE 120 KCVIHPQFLL HDEGDEESAV ALANGASTLY AFCQHHTHLN LPSHHQHHHH GEEPFKTDDL 180 RLA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0026ss00110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY770401 | 1e-145 | AY770401.1 Lotus corniculatus var. japonicus MADS box protein AP3-like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157954.1 | 1e-120 | hypothetical protein PHAVU_002G112200g | ||||
Swissprot | Q003J2 | 3e-60 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | V7CKR2 | 1e-119 | V7CKR2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157954.1 | 1e-120 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 7e-25 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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