PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0022ss04360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 28797.8 Da PI: 6.5626 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.8 | 7.5e-18 | 10 | 66 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........k 50 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ + Vang0022ss04360.1 10 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKVqmkpfiypC 66 69****************************.9***************84244444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-17 | 3 | 57 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 12.575 | 10 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-8 | 11 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMPSNGQLTV PPGFRFHPTD EELLYYYLRK KVSYEAIDLD VIREVDLNKL EPWDLKVQMK 60 PFIYPCLCTV ILSRQEDGWV VCRVFKKKNQ NRGFQQEIEE EENLTHMRTS GPCHVLEPKH 120 HMQGGLYDYN FDGTMQLPQL FSPESAAAPS SSCLGTSMNA MDILECSQNL LRLTTSGCGL 180 NLMQQQGERF SGDWSFLDKL LASHHAMDHQ HHPQSKCNPP THQAATSVAT SAQKFPFHYL 240 GCDTHDIMKF SK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0022ss04360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424650.1 | 1e-131 | PREDICTED: NAC domain-containing protein 76 | ||||
TrEMBL | A0A0L9UJP9 | 1e-129 | A0A0L9UJP9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SJV8 | 1e-129 | A0A0S3SJV8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007149140.1 | 1e-106 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7204 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-26 | NAC family protein |