PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0022ss04200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 466aa MW: 52493.3 Da PI: 9.4189 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 413 | 432 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ CgksF ++ + +H++++ Vang0022ss04200.1 413 CSQCGKSF-KPEKMYKHMKSC 432 ********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06136 | 9.0E-33 | 67 | 340 | IPR010369 | Protein of unknown function DUF966 |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
LHRQEGMTKG IKQNLCVMYS MAMESSKGYS HYTKEDLHIM KSKSKKNNTP REIEMEGKAL 60 GEVRRLHIVY FLSQIGGRAD HPHLIRVLHL TRNGVYLRDV KRWLGELRGK DLPEAFSWSY 120 KRRYKSGYVW QDLLDDDLIT PISDNEYILK GSQIHTTPFV WPPIISIHGH FQSILHFSNN 180 VKILIKLDNF LDNAAATTPS LEEKKAVGSS EISQDSLVFS SDRSSVTDDD SSKVEEEKHL 240 EITTGSEMHQ EKLETCSLPS LYHNLLSKKG THKDDQNKTH SPDSSLSTIS TSSSQSSFTK 300 IRSNSTKVSN IFRNWITCGT VETNDAALIM MNPAQTKISK EPSNIPETKA EICKGDRLGG 360 SERCFRTSWG HQDQKQQYGA RKSFDGEETN RSRKKLGDLL NQGSSKPFGG PICSQCGKSF 420 KPEKMYKHMK SCKGMKALGK SAPIVEEAQL PRSSNSSHTH YFLTN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0022ss04200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022637021.1 | 0.0 | uncharacterized protein LOC106760568 isoform X1 | ||||
TrEMBL | A0A0S3SJR1 | 0.0 | A0A0S3SJR1_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA08G16910.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8378 | 16 | 20 |