PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0022ss02660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22970.4 Da PI: 8.9727 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 70.8 | 2.9e-22 | 19 | 66 | 1 | 48 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+C++dCv+apyfpa++p+kf vhk+FGasnv k+l++ Vang0022ss02660.1 19 PCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQD 66 7*********************************************97 PP | |||||||
2 | DUF260 | 52.2 | 1.7e-16 | 89 | 136 | 53 | 100 |
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++lal+++e Vang0022ss02660.1 89 KKSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDELQTQLALAQAE 136 6899***************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.725 | 18 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-36 | 19 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
LFSHKNMKEN GRKLGTMSPC AACKLLRRRC TRDCVFAPYF PADEPQKFGS VHKVFGASNV 60 NKMLQDYLLL ALILAYKPIS GLPFSVVVKK SDAVSSMVYE ANARVRDPVY GCVGAISSLQ 120 QQVDELQTQL ALAQAEVVHM RMSQFSPPSS DQHHHRQASL MPHEPSNSSS ENMFQSSRVL 180 SSQSKSFFGM DMVVDQTIMG QSLWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-40 | 15 | 146 | 7 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-40 | 15 | 146 | 7 | 120 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0022ss02660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424349.1 | 1e-125 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 1e-56 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0S3SK41 | 1e-123 | A0A0S3SK41_PHAAN; Uncharacterized protein | ||||
STRING | XP_007149195.1 | 1e-108 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 7e-50 | LOB domain-containing protein 4 |