PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0022ss02480.1 | ||||||||
Common Name | LR48_Vigan05g035300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 364aa MW: 40144.8 Da PI: 7.0647 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.1 | 1.3e-30 | 35 | 85 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ Vang0022ss02480.1 35 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 85 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.927 | 32 | 92 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-29 | 32 | 85 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.06E-13 | 34 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-20 | 35 | 85 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.3E-7 | 37 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.2E-24 | 115 | 161 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010088 | Biological Process | phloem development | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MERMFPPKKP STMNSHDRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK 60 ATPKTIMRVM GVKGLTLYHL KSHLQDGMRA SALELQRNTA SSSAMIGRNM NDNSHMVDAI 120 RMQIEVQRRL HEQLEVQKHL QLRIEAQGKY MQSILEKAYQ TLAGENMASA ASNLKGGIVP 180 PQSIPDMGVL KEFESPLAFS SFQDLENIYG GDQIELQHNM EKPSLDHGFM SMNENLCLGK 240 KRSNPYSGSG KSPLIWSDDL RLQDLGGPAS SCLGPQDDPF KGDHIQITPP GSLDRGSTDI 300 DPMSDIYDSK PVLQCEAVVG EKKFDASMKL ERPSPRRAPL QAERMSPMIS TGTMAQGRGS 360 PFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-17 | 35 | 85 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 35 | 85 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 35 | 85 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 35 | 85 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0022ss02480.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423880.1 | 0.0 | PREDICTED: myb family transcription factor APL isoform X1 | ||||
Swissprot | Q9SAK5 | 1e-106 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A0L9UJK5 | 0.0 | A0A0L9UJK5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SJV3 | 0.0 | A0A0S3SJV3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007149174.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4964 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 1e-108 | G2-like family protein |
Publications ? help Back to Top | |||
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