PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss02430.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 341aa    MW: 39166.3 Da    PI: 4.7813
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss02430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.6e-5321255128
                NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                        +rFhPtdeelv +yL++k++g+++el ++i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v+s
  Vang0022ss02430.1   2 VRFHPTDEELVAYYLERKITGRSIEL-DIIAEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHS 92 
                        79************************.99**************96435566888************************************** PP

                NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  Vang0022ss02430.1  93 -QKKPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 125
                        .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.6141149IPR003441NAC domain
SuperFamilySSF1019411.57E-592149IPR003441NAC domain
PfamPF023651.0E-262125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVRFHPTDEE LVAYYLERKI TGRSIELDII AEVDLYKCEP WDLPDKSFLP SKDMEWYFYS  60
PRDRKYPNGS RTNRATQAGY WKATGKDRPV HSQKKPVGMK KTLVYYRGRA PHGIRTNWVM  120
HEYRLIESVP GAALSSLKDS YSLCRIFKKM IQMPAKPSKE EEQQAEDAKK ESMWISEEQM  180
LGEDSSGTEF SREMETVEEK ILNHEYPKFP CDASSSDLTQ GTCTPTDTGI AEDFQPHFAC  240
DEANSATNSY TMGMGYPSNL FQDVELIPSF AAMHYQFPYT PLVLEDFPQI TLPETKSTKP  300
EMSDPCMLYD RRRDCMNGTL EEIISLCCTQ DNNVPFPMLE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-53314925168NAC domain-containing protein 19
3swm_B3e-53314925168NAC domain-containing protein 19
3swm_C3e-53314925168NAC domain-containing protein 19
3swm_D3e-53314925168NAC domain-containing protein 19
3swp_A3e-53314925168NAC domain-containing protein 19
3swp_B3e-53314925168NAC domain-containing protein 19
3swp_C3e-53314925168NAC domain-containing protein 19
3swp_D3e-53314925168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss02430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424515.10.0PREDICTED: NAC domain-containing protein 92
TrEMBLA0A0S3SJU00.0A0A0S3SJU0_PHAAN; Uncharacterized protein
STRINGXP_007149170.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.15e-93NAC domain containing protein 20