PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss02120.1
Common NameLR48_Vigan05g048600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 386aa    MW: 43079 Da    PI: 5.9512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss02120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12313357654
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +++Er RR ri +++ +L++l Pk+     k  s a++L +AveYIk+L
  Vang0022ss02120.1 313 SIAERVRRTRISERIKKLQDLFPKS----EKQTSTADMLDLAVEYIKDL 357
                        689*********************8....577***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-15310373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-10311362No hitNo description
Gene3DG3DSA:4.10.280.105.9E-14312371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9313357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-11313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSVMYSPVFK YSDVELQLRK NQEMDSSIGN PQQHCHQPNS GLLRYCSAPS SLLASLVDNN  60
ILDCVNEESF TSEIHQHYVP STSSEMDTML SKSLPSNDGW NNSEALQEFG SKPVKQEIGE  120
SVPQGPPPQQ NEYSYGGSHL IYQSQQIQGL PNEMGARNCS NLFRQKSSPA GFFSIENDLA  180
ALREVDVFKA NDVSNRQATT STSGFSSSLA FSSRPSSCLK QMPQIAENEN ESLQENCDQS  240
RILVNEDGNS KFYIPSFTTE IWESSSFNAP KTESDDEIIS STKRSSIEKF LEVQGSIPCK  300
IRAKRGFATH PRSIAERVRR TRISERIKKL QDLFPKSEKQ TSTADMLDLA VEYIKDLRQQ  360
VKVLSDCKAK CKCTSNENHC TRTCA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss02120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423169.10.0PREDICTED: transcription factor bHLH130-like
RefseqXP_017423170.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A0L9UJY20.0A0A0L9UJY2_PHAAN; Uncharacterized protein
STRINGXP_007149053.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-53bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]