PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0022ss01320.1 | ||||||||
Common Name | LR48_Vigan05g008900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 241aa MW: 26820.6 Da PI: 7.8528 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.4e-06 | 82 | 99 | 3 | 20 |
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C+ C+ksF+r nL+ H+ Vang0022ss01320.1 82 CSVCSKSFNRYNNLQMHM 99 *****************9 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.7e-05 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +C+k+F k + ++H +++ Vang0022ss01320.1 164 YMCRKCDKTFAVKGDWRTHEKNC 186 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.82E-6 | 73 | 102 | No hit | No description |
PROSITE profile | PS50157 | 10.699 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.44 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 80 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.04E-6 | 148 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 160 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 33 | 164 | 184 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 200 | 190 | 213 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MDETLLTEDG DDETVAVALH IGLPSVDSSD LLGSGKISAC AQMGEKGEVS VVSGHPLDRL 60 NKVQYWIPTP SQILIGPTQF LCSVCSKSFN RYNNLQMHMW GHGSQYRKGP DSLKGTQPSA 120 MLRLPCFCCA PGCKHNIDHP RARPLKDFRT LQTHYKRKHG IKPYMCRKCD KTFAVKGDWR 180 THEKNCGKIW YCLCGSDFKH KRSLKDHIKA FGHGHGAVDI DCMQEDEAAS EVEHDGDSSM 240 * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0022ss01320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424456.1 | 0.0 | PREDICTED: zinc finger protein WIP2-like | ||||
Swissprot | Q9SVY1 | 1e-113 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A0L9UHY0 | 0.0 | A0A0L9UHY0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SKM1 | 0.0 | A0A0S3SKM1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148861.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-115 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|