PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss00880.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 404aa    MW: 45511.5 Da    PI: 4.8018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss00880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.87e-151663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W + Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Vang0022ss00880.1 16 RGPWNPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                       89******************************99************97 PP
2Myb_DNA-binding538e-1769114148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T+eE+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
  Vang0022ss00880.1  69 RGNFTPEEEETIIRLHRAMGNK-WSKIASRLP-GRTDNEIKNVWNTHL 114
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.1761163IPR017930Myb domain
SuperFamilySSF466893.74E-2914110IPR009057Homeodomain-like
SMARTSM007171.1E-121565IPR001005SANT/Myb domain
PfamPF002491.3E-131663IPR001005SANT/Myb domain
CDDcd001672.50E-91863No hitNo description
PROSITE profilePS5129425.83864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-2867118IPR009057Homeodomain-like
SMARTSM007177.2E-1668116IPR001005SANT/Myb domain
PfamPF002491.1E-1569114IPR001005SANT/Myb domain
CDDcd001675.42E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGKGRAPCCD KTKVKRGPWN PAEDLKLIAF IQKYGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEEETI IRLHRAMGNK WSKIASRLPG RTDNEIKNVW NTHLKKRLSP  120
KKTSESSTDE SKPESTITST SSSSSQSFFS IERPNSPKST TPYTNEFCDQ AEQLSMEDKI  180
EQDSEKAVSS ELLIGMTEDP KESSASFSCE SNIVNSSQNV AQKPEETLAS PLSVSIYTVE  240
TINIVNSGQK VAHKPEQQLA SPSSYLGPYD VGHILEIPWE PDYEFWKLLD DDSPGSFQSK  300
EVQLGEFSAN QNMILGEEGV QDGEARKWTN DFENEFGVVG EIKESNKDHN FLPKNYAVEP  360
QMDHTKAFNF DDMTEAESEL DFGSIPLWLS SPQNTTLYFN TDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26161187108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss00880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424413.10.0PREDICTED: myb-related protein 330
TrEMBLA0A0S3SKA70.0A0A0S3SKA7_PHAAN; Uncharacterized protein
STRINGXP_007149313.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.13e-76myb domain protein 63