PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0021ss02780.1 | ||||||||
Common Name | LR48_Vigan05g171100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 270aa MW: 30426.5 Da PI: 9.2445 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.3 | 5.9e-16 | 65 | 113 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++k g+Wv+e+r+p++ ++r++lg++ t+e+Aa+a++ +++++g Vang0021ss02780.1 65 IYRGVRQRK--GKWVCELREPKK---TTRIWLGTYPTPEMAARAHDVGALAIRG 113 69***9987..*********853...5********************9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-29 | 64 | 123 | No hit | No description |
Pfam | PF00847 | 1.4E-11 | 64 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.178 | 65 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-29 | 65 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-27 | 65 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-18 | 65 | 123 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-5 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-5 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MNFEIEYPFS FQSSSTIFQS SSLTPPNNNN TNPNLLSHPL VHAQFVVSPK RKGGRKKFKE 60 TRHPIYRGVR QRKGKWVCEL REPKKTTRIW LGTYPTPEMA ARAHDVGALA IRGTSAILNF 120 PNSASFLPIL NSSSPKDIRA AAAEAAESFR PISLSSLSNS RNEKTGRKTK CRRVCKKVSS 180 MEEKTQTTVL ESSLNNMQNL DREKCDVITS GMEKNNCDLS STVFFDEEAL FNMPGLLDRM 240 AESLCLFPLP SVDYWDDHAY FTDFNLWTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 52 | 122 | 3 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0021ss02780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423700.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A0L9UN25 | 0.0 | A0A0L9UN25_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150099.1 | 1e-129 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18261 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 5e-44 | dehydration response element B1A |
Publications ? help Back to Top | |||
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