PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss02730.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 237aa    MW: 26017.9 Da    PI: 4.8458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss02730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.4e-1662112155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + y+GVr++   +rWv+e+r+p++   + r++lg++  +e+Aa+a++ a+++l+g
  Vang0021ss02730.1  62 PVYRGVRQRN-GNRWVCEVREPNT---KSRIWLGTYSAPEMAARAHDVAALALKG 112
                        68*****999.9******999833...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1162112IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1963122IPR016177DNA-binding domain
PROSITE profilePS5103220.75863120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2863122IPR001471AP2/ERF domain
SMARTSM003801.1E-2563126IPR001471AP2/ERF domain
PRINTSPR003671.0E-66475IPR001471AP2/ERF domain
CDDcd000188.56E-2864122No hitNo description
PRINTSPR003671.0E-686102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDVTMNNDDY SFSSSPSSTS SQSQLCNPNS PSDNSSFPAQ KPELSSHKRK AGRKKFRETR  60
HPVYRGVRQR NGNRWVCEVR EPNTKSRIWL GTYSAPEMAA RAHDVAALAL KGTSAAFNFP  120
DSVSLLPVAK SSSAADIRAA AAQVSEVFLP ANPSSSFTRV EIETNPCSVE GVVDFAKTVT  180
NVEESNESVF FDEEAVYNMP GLLDSMAEGL LITPPSMKRF DWDEVDCETD LTLWTY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss02730.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411679.11e-176PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI41e-56DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z51e-56DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLV7BYH61e-125V7BYH6_PHAVU; Uncharacterized protein
STRINGXP_007150096.11e-125(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-41C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]