PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0021ss02160.1 | ||||||||
Common Name | LR48_Vigan05g178400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 76524.6 Da PI: 7.873 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.8 | 5.1e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF Vang0021ss02160.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL-- 199 89****************************986445444..8************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++ l+v+++r+ Vang0021ss02160.1 200 RAENGDLCVGIRRA 213 4488999****997 PP | |||||||
2 | Auxin_resp | 109.5 | 3.5e-36 | 268 | 351 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+++++FevvY+Pra t+eF+++++ v+ a++++++ G Rfkm fetedss++++ +Gt+++v+ ldp+rWpnS+Wr+L+ Vang0021ss02160.1 268 AITLAANNQTFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGLRFKMPFETEDSSRISWfMGTIASVQVLDPIRWPNSPWRLLQ 351 567899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-38 | 106 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-29 | 107 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-22 | 111 | 212 | No hit | No description |
Pfam | PF02362 | 2.6E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 112 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-23 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.7E-31 | 268 | 351 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.07 | 581 | 661 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MKETEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNLDFGAS RIPIPPLVLC 60 RVAAVKFLAD PETDEVFAKL RLVPLRNTEL DHEDSDKVDG NGPEGSEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG 180 WSSFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGGVGG PEAPCGWSSG GGGIGPYGAF 240 SAFLREESKV VRNGCGRPKV SGESVREAIT LAANNQTFEV VYYPRANTPE FCIRTSAVRG 300 AMRIQWCSGL RFKMPFETED SSRISWFMGT IASVQVLDPI RWPNSPWRLL QVTWDEPDLL 360 HNVKRVSPWL VELVSNIPVI HLAPFSPPRK KLRFPQHPEF PLDVQFPIPT FSGNPFGPST 420 SSPMCCLSDN APAGIQGARH AQIGISLSDL HLNHNKLQLG LLPTNVRQLD LQNGISNVNI 480 TNHGKSKESL SCLLTMGSPR KSLEKSDQVK RHQFLLFGQP ILTEQQISRS SSDVLSQNGT 540 ATDDENKEKK ETGFLSDSQS SVSPGKSSST AEFSWQLGSD TSHCKVFMET EDVGRTLDLS 600 CLGSYEELYM RLATMFGIER SEMLSHVLYR DATGALKQTG EEPFSEFTKT AKRLTILSDS 660 SSKDSRRVWI TGTRNAEHGL DATSNKTGPM SIFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-81 | 8 | 372 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0021ss02160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017425546.1 | 0.0 | PREDICTED: auxin response factor 18 | ||||
Refseq | XP_017425547.1 | 0.0 | PREDICTED: auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0L9UNR3 | 0.0 | A0A0L9UNR3_PHAAN; Auxin response factor | ||||
STRING | XP_007150194.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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