PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0021ss02010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 36363.2 Da PI: 9.0766 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.2 | 6e-31 | 32 | 111 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ +++ +g+kk Lvfy+gr pkg+ktdW+m+eyrl Vang0021ss02010.1 32 KSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSsGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRL 111 2233789*************************************9977888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.393 | 1 | 138 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-16 | 14 | 111 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-38 | 32 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
LLSLVKNKLK NLGIIGFCLR PKCLCKSLNE DKSLFGEEEW YFFSPRDRKY PNGLRPNRAA 60 ASGYWKATGT DKPILSSSGS KRIGVKKALV FYSGRPPKGS KTDWIMNEYR LIDTITKSPR 120 LKGSMRLDDW VLCRVRHKGY SSKISGENQE NPSELNLSAK LPRSEGYPTN MNCRADMITD 180 YQYKDYQIIA SILVGAPVSP TENMPNMSFK GCKGTNLVSV FEDGFTKVNS QMTFPSLDSY 240 FNPLTRKSNE DEQYGNLISF NRKFNAEDKM DESPSKVLAS RELNCYNQSQ SEDDIFSGNP 300 PDTGINFQEL NDLVFTGRYP Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-45 | 31 | 143 | 64 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-45 | 31 | 143 | 64 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-45 | 31 | 143 | 64 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-45 | 31 | 143 | 64 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-45 | 31 | 143 | 67 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-45 | 31 | 143 | 67 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-45 | 31 | 143 | 67 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-45 | 31 | 143 | 67 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-45 | 31 | 143 | 67 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-45 | 31 | 143 | 67 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-45 | 31 | 143 | 67 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-45 | 31 | 143 | 67 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-45 | 31 | 143 | 64 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-45 | 31 | 143 | 64 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0021ss02010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423161.1 | 0.0 | PREDICTED: NAC transcription factor 56-like | ||||
TrEMBL | A0A0S3SGL1 | 0.0 | A0A0S3SGL1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150216.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 6e-53 | NAC-like, activated by AP3/PI |