PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0021ss01970.1 | ||||||||
Common Name | LR48_Vigan05g180900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 420aa MW: 47155.2 Da PI: 8.3131 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 12 | 34 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Vang0021ss01970.1 12 FICEVCNKGFQRDQNLQLHRRGH 34 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00058 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Vang0021ss01970.1 88 WKCEKCSKKYAVQSDWKAHNKIC 110 58*****************8876 PP | |||||||
3 | zf-C2H2 | 11.2 | 0.0011 | 118 | 136 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + Vang0021ss01970.1 118 DCGTIFSRKDSFVTHRAFC 136 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.8E-6 | 11 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.13E-7 | 11 | 34 | No hit | No description |
PROSITE profile | PS50157 | 10.866 | 12 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 12 | 34 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 5.8E-5 | 12 | 34 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 14 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 180 | 53 | 83 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 76 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.13E-7 | 83 | 108 | No hit | No description |
SMART | SM00355 | 160 | 88 | 108 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
LSPKSLMATN RFICEVCNKG FQRDQNLQLH RRGHNLPWKL RQRSKEEVRK KVYVCPEKSC 60 VHHDPCRALG DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHNKIC GTRQYKCDCG 120 TIFSRKDSFV THRAFCDAMV EQSGRLPAIL SNLGNDILMN AQGPRLMPQG LQLHGFHSEF 180 GGPGSESYMG NFADAEHVEH KLRLPIWLDQ TNLQLNHPLG VVPGNSSVFS TGTTLPETNN 240 MFGISSSQAQ WTNYRYPEAS FRSASVSVPH GLKLEQEENK GELSHSVSSL YPSHMESIRM 300 GGNSPFDNSN FGLLDPNMSS TSTNNVVEIQ KIFKQGNEAE NFSLMVSSQA RSNMESGFSL 360 SCRKSLEHMV MPGIEEWESG EAEIMEKQVH SSSNTETKDF MGVGDGSVMN LQRQFLGHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 84 | 152 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 84 | 152 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 50 | KLRQRSKEEVRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0021ss01970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017425755.1 | 0.0 | PREDICTED: zinc finger protein JACKDAW-like isoform X1 | ||||
TrEMBL | A0A0L9UNT9 | 0.0 | A0A0L9UNT9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150215.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 2e-84 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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