PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss01940.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 883aa    MW: 97820.1 Da    PI: 6.8984
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss01940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-23204305199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+++ +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   +
  Vang0021ss01940.1 204 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHNVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--R 292
                        99****************************963.3445679************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         +++el+++++r+
  Vang0021ss01940.1 293 GENGELRLGIRRA 305
                        499999****996 PP
2Auxin_resp84.62e-283804441982
         Auxin_resp  19 astseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                        as+++Fvv+++k++k++k++v++G+Rfk++fe+++s+err+ sG+v+g+sdldp++Wp+S+Wr+L
  Vang0021ss01940.1 380 ASHADFVVPYHKYVKSIKNPVTIGTRFKVRFEMDESPERRCtSGIVTGMSDLDPYKWPKSRWRCL 444
                        799**************************************9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-44195316IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-40197315IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-22202304No hitNo description
SMARTSM010193.0E-23204306IPR003340B3 DNA binding domain
PfamPF023623.6E-21204305IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717204306IPR003340B3 DNA binding domain
PfamPF065071.1E-22380444IPR010525Auxin response factor
PfamPF023091.1E-6746838IPR033389AUX/IAA domain
PROSITE profilePS5174521.345754836IPR000270PB1 domain
SuperFamilySSF542773.63E-9757833No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
LHPSPPLSSF LSLLFFILFG SPIDSHSSTR TNNHHTGAFM EIDLNYAVTE PEKTASCNGD  60
CDKGAACVCS LSSPTCSSSG SSSARVSSSY LELWHACAGP LTSLPKKGNV VVYFPQGHLE  120
QASSFSPFSP MDMPTYDLQP QIFCRVVNIQ LLANKENDEV YTQVTLLPQA ELAGMYMEGK  180
EIEELGADEE GNETTPTKST PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKQQRP  240
SQELVAKDLH NVEWKFRHIY RGQPRRHLLT TGWSIFVSQK NLVSGDAVLF LRGENGELRL  300
GIRRAARPRN GLPESIVGSQ NYYPNFLSSV ANAISSKSMF HVFYSPRCNP REDCTLETAD  360
PPVESDRHRH AFTSPSCQLA SHADFVVPYH KYVKSIKNPV TIGTRFKVRF EMDESPERRC  420
TSGIVTGMSD LDPYKWPKSR WRCLMVRWDE DIEINHQDRV SPWEIDPSAS LPPLSIQSSR  480
RLKKLRPGLQ GASPSHLITG VAAGGSGFMD SEESVRSSKV LQGQEKSGFM SLYYGCDTVT  540
KQPEFEIRSP SHPNFASSTG VRKIAAGEFM RVHPPSYAGF TEPNRFPRVL QSQEICQLRS  600
LTGKVDLNFG AWGKPSVSFT NYNLQQATKP NFHSLGPEVI QTAYFPYGDI HKAGQGSGTS  660
MLCSKPTNFQ RENVPFNSPS SQSGIMRNEV GRAEVTIQNE QKLQDNISGA ASLGTNVRIP  720
NDDNFNGKVN ACKLFGFPLS GEATTQNLQN SAKRSCTKVH KQGSLVGRAI DLSRLNSYSD  780
LLIDLERLFS MEGLLRDPNK GWRILYTDSE NDIMVVGDDP WHEFCEVVSK IHIHTQEEVE  840
KMTIGMMNDD TQSCLEQAPV MIEASKSSSV GQPDSSPTVV RI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1129246722354Auxin response factor 1
4ldw_A1e-1129246722354Auxin response factor 1
4ldw_B1e-1129246722354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss01940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425708.10.0PREDICTED: auxin response factor 4-like isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A0L9UNQ60.0A0A0L9UNQ6_PHAAN; Auxin response factor
TrEMBLA0A0S3SGJ60.0A0A0S3SGJ6_PHAAN; Auxin response factor
STRINGXP_007150222.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]