PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0021ss01470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 178aa MW: 19843 Da PI: 9.2916 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.0005 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+++Fs+ L H +H Vang0021ss01470.1 45 FKCKTCNRRFSSFQALGGHRASH 67 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0015 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Vang0021ss01470.1 96 HPCPICGLQFAIGQALGGHMRKH 118 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.367 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.34E-7 | 45 | 118 | No hit | No description |
SMART | SM00355 | 0.086 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.2E-12 | 45 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.2E-8 | 96 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKRDREEGEL DNMANCLMLL TKVGESEANA TSKGRDIRDG EIGDFKCKTC NRRFSSFQAL 60 GGHRASHKKP KLMITDLSCR HQLPCTPTTK QQPRMHPCPI CGLQFAIGQA LGGHMRKHRT 120 AINDGLLNNR RDSDSLSILK KSKNGGRLNL CLDLNLMPLE DDDLKLNLRT PVLNCFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0021ss01470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424444.1 | 1e-127 | PREDICTED: zinc finger protein ZAT12 | ||||
TrEMBL | A0A0S3SGA1 | 1e-126 | A0A0S3SGA1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150296.1 | 1e-104 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 5e-29 | C2H2 family protein |