PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss01170.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 654aa    MW: 74217.5 Da    PI: 6.0315
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss01170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.83.1e-1092796501373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l+ lL+ cA+av+s++ + a++lL+++++++sp gd +qRla+yf +AL a l +++ ++y+ l++++ s    ++ ++a++++  v+P+ k
  Vang0021ss01170.1 279 LRALLMLCAQAVASDSPSFAKQLLKQIKQHSSPIGDDTQRLAHYFGNALGACLDGTGFQVYSVLSSKRIS---AKDMVKAYCAYASVCPFEK 367
                        5789***********************************************************9999998...899999************* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        ++ + aN+ I    e++e+vHiiDf+i +G++Wp+L+  L++Rp+gpp+lRiTg+++p++g   +e++ etg+rL++++++++vpfefn+ +
  Vang0021ss01170.1 368 ITIIFANKSICFQSENAETVHIIDFGIRYGFKWPSLISILSKRPGGPPKLRITGIDQPQPGfrPEERVLETGRRLEHYCKRFNVPFEFNA-I 458
                        ******************************************************************************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a++++++++e+L+++++E +aVn++++l++lldesv l+++rd+vL+l+k+ +P ++v++  + +h+ + F+ rf eal +ysalf++le++
  Vang0021ss01170.1 459 ARKWDTIRFEDLKIEKNEFVAVNCMFELEHLLDESVVLDNPRDAVLRLIKKANPGIFVHSIVNGSHDVPFFVSRFREALFHYSALFNMLETN 550
                        ******************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365
                        + re+ +r + E+ l+grei+n+vaceg er+er +t+++W+ + ++ GF+ +pl++++ +  k  lr+ + +  +++e + g++++gWk+r
  Vang0021ss01170.1 551 IDREDPTRLMFEKDLFGREIMNIVACEGCERVERPQTYKQWQLQNMRIGFRLLPLDQRVIDRLKKRLRQDAhDTNFMLEVDGGWVLQGWKGR 642
                        ***************************************************************999999887888***************** PP

               GRAS 366 pLvsvSaW 373
                         L + S+W
  Vang0021ss01170.1 643 ILHASSCW 650
                        ******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.163253630IPR005202Transcription factor GRAS
PfamPF035141.1E-106279650IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MDRRVSSTIN IANDEAESFF DESDVSAVLG YIKQMLMEED TEEKYSMFHD SLALQHTERS  60
FYQVITHQKS SSPSSTHHHH VQSNPSYRVE SPEQNVSGCS SDNSTGSYGS TSISSDSQWS  120
VDYNTPPLPN TFTFPDNFAF HSNSTSTTQS STNTGFGFLD NTLLDSAFQE QLSTAFSAVP  180
TVVIKTETEE SVEEEHFLSV SRRRNRDREE YEADGRIRKT SATYVDESEL SELLDKVVLG  240
TGLGKRVPSD TALYQKDETF LANMFGGKVR KSNEEVVDLR ALLMLCAQAV ASDSPSFAKQ  300
LLKQIKQHSS PIGDDTQRLA HYFGNALGAC LDGTGFQVYS VLSSKRISAK DMVKAYCAYA  360
SVCPFEKITI IFANKSICFQ SENAETVHII DFGIRYGFKW PSLISILSKR PGGPPKLRIT  420
GIDQPQPGFR PEERVLETGR RLEHYCKRFN VPFEFNAIAR KWDTIRFEDL KIEKNEFVAV  480
NCMFELEHLL DESVVLDNPR DAVLRLIKKA NPGIFVHSIV NGSHDVPFFV SRFREALFHY  540
SALFNMLETN IDREDPTRLM FEKDLFGREI MNIVACEGCE RVERPQTYKQ WQLQNMRIGF  600
RLLPLDQRVI DRLKKRLRQD AHDTNFMLEV DGGWVLQGWK GRILHASSCW VPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-492686528380Protein SCARECROW
5b3h_A9e-502686527379Protein SCARECROW
5b3h_D9e-502686527379Protein SCARECROW
5hyz_A7e-502836508374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610615DRLKKR
2611617RLKKRLR
3612618LKKRLRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss01170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497664.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S3TV680.0A0A1S3TV68_VIGRR; scarecrow-like protein 14
STRINGXP_007150337.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-178SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]