PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss01090.1
Common NameLR48_Vigan05g190800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 648aa    MW: 72079.1 Da    PI: 5.7051
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss01090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.57.4e-1122796453374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL++cA+av+s d+++a+ lL ++++++sp gd +qRla yf+++L+ rla    ++ + +p + ++    ++ l+a+klf+  sP+ ++s
  Vang0021ss01090.1 279 TLLTQCAQAVASFDQRNANDLLGQINQHSSPFGDGLQRLAYYFAKGLEIRLAA---GTPSYVPLEVAT---AADMLKAYKLFVTSSPLQRMS 364
                        69**************************************************9...333334444444...789****************** PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                        + ++ +++   ve+e+ vH+iDf+i +G+QWp+L++ L++R++gpp+lRiTg++ p++g   +e++eetg+rLa+++++++vpfe+n  +a+
  Vang0021ss01090.1 365 NYLTTRTVISLVENESSVHVIDFGICYGFQWPCLIKRLSERDGGPPRLRITGIDLPRPGfrPAERVEETGRRLANYCKKFNVPFEYNC-LAQ 455
                        **********************************************************9*9***************************.6** PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        ++e+++l +L+++++E+++V++ ++l++l+de+v+++s+rd+vLkl+++++P+++ +   +  ++++ Fl+rf eal+++s+lfd++e+++p
  Vang0021ss01090.1 456 KWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVAVNSPRDAVLKLIRKINPNIFLHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEVNVP 547
                        ******************************************************************************************** PP

               GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                        re+++r + E+ llgr++ nv+acegaer+er et+++W+ r  +aGFk+v+++ + ++ ak +++k + + + v e+ ++l++gWk+r L 
  Vang0021ss01090.1 548 REDSQRLMFEKGLLGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQVTFDPQLVNYAKQMVKKEYHKDFVVAEDGKWLLQGWKGRILN 639
                        *********************************************************************888******************** PP

               GRAS 369 svSaWr 374
                        ++SaW+
  Vang0021ss01090.1 640 AISAWT 645
                        *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.443251625IPR005202Transcription factor GRAS
PfamPF035142.5E-109279645IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MLSTNSLVQN IGGTISVFSD QNQVTEGIEL DDSSSSSGTS SSGESTKYSN NILRYISDIL  60
MDEEDDLLNK PCMLQECLRL QAAEKSFLDV LVHHSHPSSS GESIGIADSD ENFGRTVSFE  120
SNGSCVTDNS CDCDLVHGVG EFDSSFLPQQ THLVYSPDVV DAFRVRDGTW NLFQSHTKPF  180
MVEEGRSTSA SREKRSHELD DDAGLEQDGR RGAKVSAVFS GESESPEILD EVLLYQIGRS  240
GCSSEPSQGV DLGGSNGKGA RSRSKKGSTK AGTAVDLWTL LTQCAQAVAS FDQRNANDLL  300
GQINQHSSPF GDGLQRLAYY FAKGLEIRLA AGTPSYVPLE VATAADMLKA YKLFVTSSPL  360
QRMSNYLTTR TVISLVENES SVHVIDFGIC YGFQWPCLIK RLSERDGGPP RLRITGIDLP  420
RPGFRPAERV EETGRRLANY CKKFNVPFEY NCLAQKWETI KLADLKIDRN EVTVVSCFYR  480
LKNLPDETVA VNSPRDAVLK LIRKINPNIF LHGVVNGTYS APFFLTRFRE ALYHFSSLFD  540
MFEVNVPRED SQRLMFEKGL LGRDAINVIA CEGAERVERP ETYKQWQVRN LRAGFKQVTF  600
DPQLVNYAKQ MVKKEYHKDF VVAEDGKWLL QGWKGRILNA ISAWTPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4728364625380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss01090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424971.10.0PREDICTED: scarecrow-like protein 11
TrEMBLA0A0L9UNH10.0A0A0L9UNH1_PHAAN; Uncharacterized protein
STRINGXP_007150339.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-168GRAS family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]