PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0021ss00510.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 278aa MW: 31993.8 Da PI: 9.0078

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0021ss00510.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	139	158	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Vang0021ss00510.1 139 FACSICSKTFNRYNNMQMHM 158 78*****************9 PP
2	zf-C2H2	14.5	0.0001	223	245	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+ksF k + ++H +++ Vang0021ss00510.1 223 FMCRKCSKSFAVKGDWRTHEKNC 245 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.6E-6	108	162	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	139	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.17	139	161	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.45	139	166	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	141	161	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	186	218	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.8E-5	209	243	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.7E-6	209	243	No hit	No description
SMART	SM00355	56	223	243	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MSFRECNVEN ENLCLQTPTF IEWLKPSSSS VISSISSPPS SLAQHDQLSQ ETIQFFPFKE 60 DHEKDGLEVK EEKVEQVTVA LHIGLPHTVD PDTDNHEKKI IHVKEEEPLK KSFQGCSFNQ 120 ERRFWIPTPA QILVGPMQFA CSICSKTFNR YNNMQMHMWG HGSEFRKGPD SLRGTQPAAM 180 LRLPCYCCAQ GCKNNINHPR AKPLKDFRTL QTHYKRKHGA KPFMCRKCSK SFAVKGDWRT 240 HEKNCGKLCN KKFSKLLRNI RERFATEHLQ GVMLCMH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0021ss00510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424584.1	0.0	PREDICTED: zinc finger protein WIP3-like
Swissprot	Q9SGD1	2e-89	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A0L9UN09	0.0	A0A0L9UN09_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SGV4	0.0	A0A0S3SGV4_PHAAN; Uncharacterized protein
STRING	XP_007150080.1	1e-162	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	2e-83	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]