PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss00200.2
Common NameLR48_Vigan05g165800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 357aa    MW: 39727.3 Da    PI: 7.0222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss00200.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-4981341128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        + pGfrF Ptdeel+++yL+kk++g++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++
  Vang0021ss00200.2   8 MFPGFRFCPTDEELISYYLRKKLDGHEESV-QVISEVELCKFEPWDLPaKSFIQSNNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERN 98 
                        579************************988.99***************666667789*********************************** PP

                NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+s +++++g+k+tLvf+ grapkge+t+W+mhey +
  Vang0021ss00200.2  99 VKS-GSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCI 134
                        ***.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-554149IPR003441NAC domain
PROSITE profilePS5100553.5718150IPR003441NAC domain
PfamPF023654.8E-2610133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSIAASSMFP GFRFCPTDEE LISYYLRKKL DGHEESVQVI SEVELCKFEP WDLPAKSFIQ  60
SNNEWFFFSP RGRKYPNGSQ SKRATECGYW KATGKERNVK SGSNVIGTKR TLVFHLGRAP  120
KGERTEWIMH EYCINDKSQD SLVICRLKRN TEFRLSDHSN RASSSQRHPV NSHESGCAIS  180
EGGGIDQRDV CEQDKEVGCS SKRSSSSYGS PSNEQIDSVS ESNHRPVNEA TLTESSEQAK  240
EVYEEDCYAE ILKDDIIKLD ESSISAEGHT GAQEPAQMHP AQGTAQRRIR LRVGNSKRSS  300
SAVVGFRSTI MHSSKSTFFA GISNSLVALV FLVFTLIFLL FVGWSQSSEV LSGCNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-46715019168NAC domain-containing protein 19
3swm_B3e-46715019168NAC domain-containing protein 19
3swm_C3e-46715019168NAC domain-containing protein 19
3swm_D3e-46715019168NAC domain-containing protein 19
3swp_A3e-46715019168NAC domain-containing protein 19
3swp_B3e-46715019168NAC domain-containing protein 19
3swp_C3e-46715019168NAC domain-containing protein 19
3swp_D3e-46715019168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss00200.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425237.10.0PREDICTED: NAC domain-containing protein 40
SwissprotQ9XIN78e-93NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A0L9UMT90.0A0A0L9UMT9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SH150.0A0A0S3SH15_PHAAN; Uncharacterized protein
STRINGGLYMA13G39090.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.18e-95NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]