PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss00200.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 345aa    MW: 38335.1 Da    PI: 9.2584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.32e-294612251128
                NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s +++++g+k+tLvf+ grapkge+t+W+mhey +
  Vang0021ss00200.1  46 FIQSNNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKS-GSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCI 122
                        334678**************************************.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.1161138IPR003441NAC domain
PfamPF023655.4E-1630121IPR003441NAC domain
SuperFamilySSF1019413.14E-3345137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAMKRVFKSF LSRKLKNLNN LMIVMDVWGP RQDNLVSTGL KPAKSFIQSN NEWFFFSPRG  60
RKYPNGSQSK RATECGYWKA TGKERNVKSG SNVIGTKRTL VFHLGRAPKG ERTEWIMHEY  120
CINDKSQDSL VICRLKRNTE FRLSDHSNRA SSSQRHPVNS HESGCAISEG GGIDQRDVCE  180
QDKEVGCSSK RSSSSYGSPS NEQIDSVSES NHRPVNEATL TESSEQAKEV YEEDCYAEIL  240
KDDIIKLDES SISAEGHTGA QEPAQMHPAQ GTAQRRIRLR VGNSKRSSSA VVGFRSTIMH  300
SSKSTFFAGI SNSLVALVFL VFTLIFLLFV GWSQSSEVLS GCNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-255213775167NAC domain-containing protein 19
3swm_B3e-255213775167NAC domain-containing protein 19
3swm_C3e-255213775167NAC domain-containing protein 19
3swm_D3e-255213775167NAC domain-containing protein 19
3swp_A3e-255213775167NAC domain-containing protein 19
3swp_B3e-255213775167NAC domain-containing protein 19
3swp_C3e-255213775167NAC domain-containing protein 19
3swp_D3e-255213775167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss00200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425237.10.0PREDICTED: NAC domain-containing protein 40
TrEMBLA0A0L9UMT90.0A0A0L9UMT9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SH150.0A0A0S3SH15_PHAAN; Uncharacterized protein
STRINGGLYMA13G39090.21e-176(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-61NTM1-like 8