PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0017s00470.1
Common NameLR48_Vigan04g194400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 284aa    MW: 32091.5 Da    PI: 7.5515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0017s00470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13123174155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Vang0017s00470.1 123 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 174
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.30E-13121178No hitNo description
SuperFamilySSF474594.71E-17122188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-14123187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MALEAVVFPQ DPFPYACKDY FYSLVGAAPD YGFQAAEEEK LLLGIINNNI EDNLYTTWDS  60
SSTSVLQNVK EQWDSHSSPE ACTVDESMIP PLSSTAEATA TTTTRRKRRR TKSAKNKEEI  120
ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYVQRGDQA SIIGGAINFV KELEQVLQSM  180
EGEKRRKQGE EENVGLNGWT TPFAEFFTFP QYTTRGNQKQ EQKQWAVADI EVTMVDSHAN  240
LKILAKKQPS HLMKIVLGLQ TLRLTILHLN LIKVSVACVA RMN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109RKRRR
2105110RKRRRT
3123134RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0017s00470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421277.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T41e-71BH096_ARATH; Transcription factor bHLH96
SwissprotQ9SK918e-72BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0L9UGA80.0A0A0L9UGA8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RD310.0A0A0S3RD31_PHAAN; Uncharacterized protein
STRINGXP_007136288.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]