PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0017s00340.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 295aa    MW: 32454.2 Da    PI: 6.8922
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0017s00340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12e-17207243135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Vang0017s00340.1 207 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRGT 243
                       *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.9E-105187IPR010399Tify domain
PROSITE profilePS5132012.0455186IPR010399Tify domain
PfamPF062001.8E-105586IPR010399Tify domain
PROSITE profilePS510179.058120162IPR010402CCT domain
PfamPF062031.5E-10120151IPR010402CCT domain
PROSITE profilePS5011410.646201260IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-16201254IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-12201253No hitNo description
Gene3DG3DSA:3.30.50.103.2E-16205248IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.70E-17206252No hitNo description
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
PfamPF003203.7E-15207243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MYDPMNQIVP AEDNDASDQH IHYSSHSIEN VGAIVEHVSA DSLYVPPPEI SIHDSSQLTL  60
SFRGQVYVFD AVTPDKAVQA VLLLLGGSEL TSGSQCAEEL SPQNHAGAAE FPARCSLPQR  120
VASLNRFRQK RKERCFDKKV RYSVRQEVAL RSESDRLKGF LFAVILHVYW MHRNKGQFTS  180
SKKQDGANSW GSDQESGQEA VQSETSCTHC GTSSKSTPMM RRGPSGPRSL CNACGLFWAN  240
RGTLRDLSKR NQELSLVPLE QVGVGNNNDL DCGSIIPAQH DNHVNDNKAL VSDR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0017s00340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-127AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420664.10.0PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH62e-80GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0L9UG870.0A0A0L9UG87_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RD170.0A0A0S3RD17_PHAAN; Uncharacterized protein
STRINGXP_007136308.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.34e-77GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]