PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0017s00240.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24360.9 Da    PI: 5.4686
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0017s00240.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.8e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+i+n + rqvtfskRr g++KKAeELSvLCda+v +i+fsstgkl++yss
  Vang0017s00240.2  9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFDYSS 59
                      68***********************************************96 PP

2K-box38.74.3e-14861601690
             K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          + ++kL kei +  +e+  ++G+dL+ Lsl+eLqqLe++Le++l ++ + K  +l e+ ++l+kk  e++ e
  Vang0017s00240.2  86 MQLETATKLSKEIAERTQELSWMKGDDLQGLSLNELQQLEKKLESGLDRVIEIKGIVLEEENKHLKKKLAETEME 160
                       4456689*************************************************************9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.436161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-30274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-251057IPR002100Transcription factor, MADS-box
CDDcd002653.08E-331273No hitNo description
PRINTSPR004042.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.82784191IPR002487Transcription factor, K-box
PfamPF014861.6E-989160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTRAKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD ADVGLIVFSS TGKLFDYSSS  60
SMNDIIIKYN THSPGMDKLD RPSLEMQLET ATKLSKEIAE RTQELSWMKG DDLQGLSLNE  120
LQQLEKKLES GLDRVIEIKG IVLEEENKHL KKKLAETEME AVLRKATMHF LMESNMGMQE  180
EGVSLESTNN VSSCISDPPL EDGSSDTSLK LGLPFSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20173173MEF2C
5f28_B5e-20173173MEF2C
5f28_C5e-20173173MEF2C
5f28_D5e-20173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0017s00240.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938241e-120BT093824.1 Soybean clone JCVI-FLGm-17H2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421200.11e-157PREDICTED: MADS-box protein JOINTLESS-like isoform X3
SwissprotQ9FUY64e-70JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A0S3RCL11e-146A0A0S3RCL1_PHAAN; Uncharacterized protein
STRINGXP_007136341.11e-126(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]