PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0017s00240.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24360.9 Da PI: 5.4686 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.2 | 3.8e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+v +i+fsstgkl++yss Vang0017s00240.2 9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFDYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 38.7 | 4.3e-14 | 86 | 160 | 16 | 90 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 + ++kL kei + +e+ ++G+dL+ Lsl+eLqqLe++Le++l ++ + K +l e+ ++l+kk e++ e Vang0017s00240.2 86 MQLETATKLSKEIAERTQELSWMKGDDLQGLSLNELQQLEKKLESGLDRVIEIKGIVLEEENKHLKKKLAETEME 160 4456689*************************************************************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.436 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-30 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.08E-33 | 12 | 73 | No hit | No description |
PRINTS | PR00404 | 2.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.827 | 84 | 191 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-9 | 89 | 160 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MTRAKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD ADVGLIVFSS TGKLFDYSSS 60 SMNDIIIKYN THSPGMDKLD RPSLEMQLET ATKLSKEIAE RTQELSWMKG DDLQGLSLNE 120 LQQLEKKLES GLDRVIEIKG IVLEEENKHL KKKLAETEME AVLRKATMHF LMESNMGMQE 180 EGVSLESTNN VSSCISDPPL EDGSSDTSLK LGLPFSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-20 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 5e-20 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 5e-20 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 5e-20 | 1 | 73 | 1 | 73 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0017s00240.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093824 | 1e-120 | BT093824.1 Soybean clone JCVI-FLGm-17H2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421200.1 | 1e-157 | PREDICTED: MADS-box protein JOINTLESS-like isoform X3 | ||||
Swissprot | Q9FUY6 | 4e-70 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A0S3RCL1 | 1e-146 | A0A0S3RCL1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007136341.1 | 1e-126 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-55 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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