PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0013ss00740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 409aa MW: 46917 Da PI: 8.9196 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.3e-31 | 97 | 150 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Vang0013ss00740.1 97 PRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 150 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-30 | 93 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.218 | 93 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.78E-15 | 95 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-22 | 97 | 152 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-9 | 98 | 149 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
LKWELNLIPE QQQTNMSDEY EMSDEQVEDS SIGSSQKCSS FDLNEEASSE NNSKGNDTRY 60 EEAKDEGTST NKSSSITREG NSERRGGVRQ YVRSKMPRLR WTPELHLSFV HAVERLGGQE 120 RATPKLVLQL MNVRGLSIAH VKSHLQMYRS KKLDEAGQVL SETYKSSHEL GRISHVTHPR 180 QHFKMGNGGI ILASDYTDHS YYHGLLHPSN LSHSHSKAID SRHQQWFFNN HQPFRKPSYF 240 SNEVGSATLQ TQARSMSSNQ IQVMDATSIA PMRPSQFLEE KRWPPLEIMN NHPWKKRLPS 300 NTDSKSVLLH QFGSTTSPSL RPTELNFPNK TRIREHLSNS DEHRSYSNAF NPEFEPPFRI 360 KSNQEKMQKE KQWVPDLRLS LSQRDGNSDG KNDHCRETQE INTKLSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 98 | 152 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 98 | 152 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-17 | 98 | 152 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 98 | 152 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 98 | 152 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 98 | 152 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 98 | 152 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 98 | 152 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 98 | 152 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 98 | 152 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 98 | 152 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 98 | 152 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0013ss00740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017431888.1 | 0.0 | PREDICTED: two-component response regulator ARR18-like | ||||
TrEMBL | A0A0S3QZ88 | 0.0 | A0A0S3QZ88_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159455.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-37 | G2-like family protein |