PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0013ss00590.1
Common NameLR48_Vigan10g130700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 172aa    MW: 19350.9 Da    PI: 10.9388
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0013ss00590.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.13.9e-1370127562
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        ++ +r+ +NRe+ArrsR RK++ ++ L + v++L +eN++   +++  +++  +++ e
  Vang0013ss00590.1  70 RKRKRMTSNRESARRSRMRKQKHLDDLVTQVAQLRKENQQILTTVNITTQQFLSVEXE 127
                        6789999********************************9999988887777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-1866130IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.66868131IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-1169145No hitNo description
PfamPF001704.7E-1070115IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-1270122No hitNo description
CDDcd147028.27E-1971121No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAAITRHRTF PLYNRTCIKT RPAKKNPTIT NRALLGAGPM ASSSGTCSGS SSLLQNSGSE  60
EDLQAVMDQR KRKRMTSNRE SARRSRMRKQ KHLDDLVTQV AQLRKENQQI LTTVNITTQQ  120
FLSVEXENSV LRAQVGELSH RLESLNEIIE LWLCVRRRGE DEVGIPTVPF L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16990RKRKRMTSNRESARRSRMRKQK
28289RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0013ss00590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406399.13e-90PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L51e-40BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0L9VK411e-103A0A0L9VK41_PHAAN; Uncharacterized protein
STRINGXP_007131800.11e-58(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.18e-39G-box binding factor 6
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]