PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0011ss00240.1
Common NameLR48_Vigan08g118600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 717aa    MW: 78391.8 Da    PI: 6.1121
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0011ss00240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2084139156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Vang0011ss00240.1  84 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 139
                        688999***********************************************999 PP
2START225.41.7e-702744941206
                        HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        ela +a++el+ +a+ ++p+W +      +++n+de++++f+++ +     ++ ea+r+++vv+m+++ lve+l+d++ qW++ +     +a
  Vang0011ss00240.1 274 ELAVAAMEELIGMAQMGDPLWLTTLdassTILNEDEYIRSFPRGIGpkpsgFKCEASRETAVVIMNHVSLVEILMDVN-QWSTVFSgivsRA 364
                        57899******************999999**************999********************************.************* PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                        +tlev+s+g      galq+m+aelq+++plvp R+++fvRy++q+++g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skv
  Vang0011ss00240.1 365 MTLEVLSTGvagnynGALQVMTAELQLPTPLVPtRESYFVRYCKQHSDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYSKV 452
                        ***************************************************************99....5********************** PP

                        EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        twvehv++++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  Vang0011ss00240.1 453 TWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 494
                        ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2363139IPR009057Homeodomain-like
SuperFamilySSF466891.5E-1973141IPR009057Homeodomain-like
PROSITE profilePS5007116.92581141IPR001356Homeobox domain
SMARTSM003891.2E-1982145IPR001356Homeobox domain
PfamPF000464.0E-1884139IPR001356Homeobox domain
CDDcd000862.40E-1984142No hitNo description
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
SuperFamilySSF559611.19E-35265496No hitNo description
PROSITE profilePS5084844.5265497IPR002913START domain
CDDcd088751.77E-130269493No hitNo description
SMARTSM002341.5E-64274494IPR002913START domain
PfamPF018523.0E-59275494IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-5368476IPR023393START-like domain
SuperFamilySSF559617.51E-19513708No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MIPARNMPSM IARKNKNNLG GFGSSSTFTL AQPNLMEALE MGQNTSESEV PRIREDEFDS  60
ATKSGSENHE GASGEDQDPR PNKKKRYHRH TQHQIQEMEA FFKECPHPDD KQRKELSREL  120
GLEPLQVKFW FQNKRTQMKT QHERHENTQL RTENEKLRAD NMRYREALSN ASCPNCGGPT  180
AIGEMSFDEH HLRLENARLR EEIDRISAIA AKYVGKPVVN YSNISPSLPP RPLELGVGAG  240
FGGQPAIGVD MYGAGDLLRS ISGPTEADKP IIIELAVAAM EELIGMAQMG DPLWLTTLDA  300
SSTILNEDEY IRSFPRGIGP KPSGFKCEAS RETAVVIMNH VSLVEILMDV NQWSTVFSGI  360
VSRAMTLEVL STGVAGNYNG ALQVMTAELQ LPTPLVPTRE SYFVRYCKQH SDGTWAVVDV  420
SLDNLRPSPS ARCRRRPSGC LIQEMPNGYS KVTWVEHVEV DDRGVHNLYK QLVSSGHAFG  480
AKRWVATLDR QCERLASAMA TNIPTVDVGV ITNQEGRKSM MKLAERMVIS FCAGVSASTA  540
HTWTTLSGTG ADDVRVMTRK SVDDPGRPPG IVLSAATSFW LPVPPKRVFD FLRDENSRNE  600
SANSSQSNML ILQESCTDST GSFVIYAPVD IVAMNVVLNG GDPDYVALLP SGFAILPDGT  660
ISHETGPGGS LLTVAFQILV DSVPTAKLSL GSVATVNNLI ACTVERIKAS LSGETA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0011ss00240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634310.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0L9V6Q80.0A0A0L9V6Q8_PHAAN; Uncharacterized protein
STRINGXP_007132557.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]