PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss03040.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Nin-like
Protein Properties Length: 838aa    MW: 92827.8 Da    PI: 4.8057
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss03040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK21.44.9e-07597621226
             RWP-RK   2 ekeisledlskyFslpikdAAkeLg 26 
                        ek++sl++l++yFs+++kdAAk++g
  Vang0010ss03040.1 597 EKNVSLSVLQQYFSGSLKDAAKSIG 621
                        79*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542774.58E-22732821No hitNo description
Gene3DG3DSA:3.10.20.2406.4E-23734816No hitNo description
SMARTSM006661.2E-21737819IPR000270PB1 domain
PROSITE profilePS5174521.909737819IPR000270PB1 domain
PfamPF005642.5E-16740818IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MEDHFSPKGK ETGYCTSPCT QLEESTSVDG GMKKSASEDM FSNFSELMNF DTYAGWSNSS  60
SMNYQSLASV FSSFSSASYP PSDGLNLVEQ GNGLCFMTEV SEIHNGIESS PSCEERGIFQ  120
QMDIQLGFLD EANDSNSFDS KQNRNGLYQQ LNTSDMCNYM ISRSSGRPLA DRMLRSLSFF  180
MESVDEGMLA QVWVPIKHGD EFILCTSEQP YLLDPKLAGY REVSRAFTFS AEGKKGSCPG  240
LPARVFTSHV PEWTSNVGYY NKTEYLRLDH ALNHEIRGSI ALPVSDMHSH EPCAVLELVT  300
TKEKPNFDRE LEIVTQALQL VNLKTTMPPR LLPQCLSSNK RAALTEIVDV LRAVCHAHRL  360
PLALTWIPCC YSEGIGDEAE RIRIKEGHTS SDEKCVLCIE ESACYINDAA IGGFVHACVE  420
HHLEEGQGIA GKALQSNHPF FYTDVKTYDI SEYPLVHHAR KYNLNAAVAI RLRSTYTNDD  480
DYILEFFLPV NMTGSSEQQL LLDNLSGTMR RICRSLRTVS DTEITGIEGS VAGFPKEKLS  540
YFFPMSKRNS QIAFINDDYD SNQKMSLKAS NNGIEAAHGQ VMNGPRKQIE KKRSTVEKNV  600
SLSVLQQYFS GSLKDAAKSI GGETPIEGGF KKDNASSDDC CEDSKSVAMN DGSSQKAKNQ  660
DCPEQTCSIS LVTDEAEVGV DGGEGIEEHN NLINSSSTTN SSNGSGSMMH GSSSCSQSFE  720
NQKHSKVKPT CVDSESKMIV KASYRGDTIR FKFDPSAGCF QLYEEVATRF KLQNGLFKLK  780
YLDDEEEWVM LENDSDLQEC VEILHDIGTR CVKFLVRDVP CVLSSCGSNN YFLPDSS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss03040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494469.10.0protein NLP9
RefseqXP_014494470.10.0protein NLP9
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLA0A151TG330.0A0A151TG33_CAJCA; Uncharacterized protein
STRINGXP_007131923.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34643465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]