PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0010ss02100.1

Common Name

LR48_Vigan08g153900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 537aa MW: 59545.6 Da PI: 8.6503

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0010ss02100.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	66	86	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Vang0010ss02100.1 66 CEICSKGFQRDQNLQLHRRGH 86 *******************88 PP
2	zf-C2H2	11.8	0.00077	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Vang0010ss02100.1 141 WKCEKCSKKYAVQSDWKAHSKIC 163 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.31E-7	63	86	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.1E-5	63	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.762	64	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	64	86	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	66	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	78	106	136	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.8E-5	129	162	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.31E-7	136	161	No hit	No description
SMART	SM00355	140	141	161	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MMSEESFSVP PNTVRDSLVH VQPPSSNPNN NNPNPSSNPA KRRRNPDAEV VALSPKSLMA 60 TNRFLCEICS KGFQRDQNLQ LHRRGHNLPW KLKQRANKDQ VRKKVYVCPE KSCVHHDPSR 120 ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRKD 180 SFITHRAFCD ALAEESVRIT TVPAALSNLR NDHHLTNAQA SRIPQIFSGF HSDQFGGSGT 240 SESLVNYAEA NHHHHQQQQQ LQQKLRLPLW LDHQANSQVL HHPLINFPTK PSDFSSSGLN 300 PVPDVVQTMD MFGPQFVNYR YPEASFGGAN LSVLPPHGLK QEQEENKGEL SHSASSNLYL 360 SSNQNPPHYM SATTVLQKTV QMGSTRVNDN AFCSTGRNRN GNHNNVVNNV VVEVQKLDDL 420 VSVEGCTNLG GGGGGYLLNG DSNNSFVVVN GTKGLEHMVM PVDEETTAAS IMGKQLHSIS 480 SHSKNQLGLT RDFLGVGDNN IESIRRPFFE QDLVEFNAMG SGSGMNLQSQ YGGHYV*

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MMSEESFSVP PNTVRDSLVH VQPPSSNPNN NNPNPSSNPA KRRRNPDAEV VALSPKSLMA  60
TNRFLCEICS KGFQRDQNLQ LHRRGHNLPW KLKQRANKDQ VRKKVYVCPE KSCVHHDPSR  120
ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALAEESVRIT TVPAALSNLR NDHHLTNAQA SRIPQIFSGF HSDQFGGSGT  240
SESLVNYAEA NHHHHQQQQQ LQQKLRLPLW LDHQANSQVL HHPLINFPTK PSDFSSSGLN  300
PVPDVVQTMD MFGPQFVNYR YPEASFGGAN LSVLPPHGLK QEQEENKGEL SHSASSNLYL  360
SSNQNPPHYM SATTVLQKTV QMGSTRVNDN AFCSTGRNRN GNHNNVVNNV VVEVQKLDDL  420
VSVEGCTNLG GGGGGYLLNG DSNNSFVVVN GTKGLEHMVM PVDEETTAAS IMGKQLHSIS  480
SHSKNQLGLT RDFLGVGDNN IESIRRPFFE QDLVEFNAMG SGSGMNLQSQ YGGHYV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	137	202	3	68	Zinc finger protein JACKDAW
5b3h_F	2e-36	137	202	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	103	KLKQRANKDQVRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0010ss02100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017433758.1	0.0	PREDICTED: protein indeterminate-domain 9-like
TrEMBL	A0A0L9V707	0.0	A0A0L9V707_PHAAN; Uncharacterized protein
STRING	XP_007132196.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	4e-95	C2H2-like zinc finger protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]