PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss02080.1
Common NameLR48_Vigan08g154200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 815aa    MW: 90683.2 Da    PI: 6.3659
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss02080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.8e-24187288199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   +
  Vang0010ss02080.1 187 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--R 275
                        99****************************963.3445679************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         +++el+++++r+
  Vang0010ss02080.1 276 GENGELRLGIRRA 288
                        499999****996 PP
2Auxin_resp110.71.5e-36313395182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                        +a+a+stks F+v+Y+Pr s+++Fvv++++++k++k++vs+G Rfkm++e+++s+err+ sGt++++sdldp+rWp+SkWr+L
  Vang0010ss02080.1 313 VANAVSTKSKFHVFYSPRESHADFVVPYQRYVKSIKNPVSIGARFKMRLEMDESQERRCnSGTMIATSDLDPYRWPKSKWRCL 395
                        689*******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-41178300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-44179298IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-23185287No hitNo description
PfamPF023625.0E-22187288IPR003340B3 DNA binding domain
SMARTSM010191.5E-24187289IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084187289IPR003340B3 DNA binding domain
PfamPF065073.6E-31313395IPR010525Auxin response factor
PROSITE profilePS5174520.517686770IPR000270PB1 domain
SuperFamilySSF542774.58E-10689765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
LVVACFYFWL PFESLKSLHH QVFMEFDLNH EVTEVEKNAF GDREREKDAG VSCWSSSTSS  60
SSSSSSARVS SSYLELWHAC AGPLTSLPKK GNVVVYFPQG HLEQVASFSP FTPMEIPSYD  120
LQPQIFCRVV NVQLLANKEN DEVYTQVTLL PQPELEGMNS EGKELEEFGA EEEGDERSPT  180
KSTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVEWKFR  240
HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRGENGE LRLGIRRAVR PRNDLPESVI  300
GSQNCYPNVL SSVANAVSTK SKFHVFYSPR ESHADFVVPY QRYVKSIKNP VSIGARFKMR  360
LEMDESQERR CNSGTMIATS DLDPYRWPKS KWRCLMVRWD EDIETNHQDR VSPWEIDPSA  420
PLPPLSIQSS PRLKKLRTGL QVASPSQLIT ARGSGLVGFE ESVRSPKVLQ GQENAGFVSL  480
YYGCDTVTKP LGFEMSSPSH PNLGSAEVRK ATSSEISSVH PFSYAGFVET NRFPRVLQGQ  540
EICPLKSLTG KIDLNLGTWG MPNLGFNLHQ ATKPNFQPTL FPYGDIHQAV QPSLFCSKST  600
TFQRENVPFN KPSTQAGIIV NEVGQPELPN EHKLQDNLSA AAALGAANMG VPNDNNVQGK  660
VNACKLFGFS LSGETTAQNL QNSAKRSCTK VHKQGSLVGR AIDLSRLSSY NDLLIELERL  720
FGMEGLLKDP NNGWRILYTD SENDIMVVGD DPWHEFCDVV SKIHIYTQEE VEKMTIGIIS  780
DDTHSCLEEA PIITEASKSS SVGQPDYSPT AVRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-119574182354Auxin response factor 1
4ldw_A1e-119574182354Auxin response factor 1
4ldw_B1e-119574182354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss02080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433556.10.0PREDICTED: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A0L9V6M10.0A0A0L9V6M1_PHAAN; Auxin response factor
TrEMBLA0A0S3SCL30.0A0A0S3SCL3_PHAAN; Auxin response factor
STRINGXP_007132189.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  5. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  6. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  7. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]