PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0010ss01840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 236aa MW: 25806.6 Da PI: 4.68 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 51.9 | 1.6e-16 | 35 | 63 | 2 | 30 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPr 30 +e+alkcprCdstntkfCyynnyslsqP Vang0010ss01840.1 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPS 63 7899************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.0E-12 | 37 | 62 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-8 | 39 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDPSTGQHQQ MSNQSLENML ACSKAQQERK PRPQPEQALK CPRCDSTNTK FCYYNNYSLS 60 QPSDLTLALA RLQKQSCGQL GYDEHDFSIL GNPTSTPCDI LGNPGMHHSS TNPGFLDSLR 120 SGFLGTQSNV QNLYYGYGNG DMGEVDNGNA CGGGVSGEMM LPYDQEMSVA TTQAVTVTTM 180 KQELCNAREQ SESRVLWGFP WQLNGDTNMA ELDSGRANWN ALNSSWHGLL NSPLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0010ss01840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020214603.1 | 1e-127 | dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A0S3SCW3 | 1e-121 | A0A0S3SCW3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132171.1 | 1e-117 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5026 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-14 | TARGET OF MONOPTEROS 6 |