PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss01460.1
Common NameLR48_Vigan238s003800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 705aa    MW: 79648.2 Da    PI: 6.1507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss01460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.53.2e-1153367013373
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL++cA+av+s d + a+++L+++++++sp gd +qRla+yf+ +L++rla    ++ k +  +++s    ++ l+a+++++  sP++ +s
  Vang0010ss01460.1 336 TLLTQCAQAVASFDPRTANEILKQIRQHSSPLGDGLQRLAHYFADGLETRLAA---GTPKFMLFQSAS---AADMLKAYRVYVTSSPFHWMS 421
                        69**************************************************9...555555555555...89******************* PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                        +++aN++Il+ +++e+ +HiiDf+is+G+QWp+L+q L++Rp+gpp++RiTg++ p+sg   +e++eetg+rL+k+++++gvpfe+n  +a+
  Vang0010ss01460.1 422 FFMANRTILKFTQSESSIHIIDFGISYGFQWPCLIQRLSQRPGGPPKIRITGIDFPQSGfrPAERVEETGRRLEKYCKRFGVPFEYNC-LAQ 512
                        **********************************************************9*****************************.6** PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        ++e+++le+L++++ E+++Vn++++l++l de+v+++ +rd+vL+l+++++P+++ +   +  +n++ Fl+rf eal ++salfd++ea++p
  Vang0010ss01460.1 513 KWETIRLEDLKLDRSEVTVVNCMYRLKNLSDETVTVDCPRDAVLRLIRRINPTIFMHGVGNGTYNAPFFLTRFREALFHFSALFDMFEANVP 604
                        ******************************************************************************************** PP

               GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                        re+  r + E+ l+gr++ nv+acegaer+er et+++W+ r ++a Fk+++l+ + ++++k +++k + + ++v+e+ +++++gWk+r L+
  Vang0010ss01460.1 605 REDPSRLMFEKGLFGRDAINVIACEGAERVERPETYKQWHVRNQRARFKQLSLNRDLVNKVKEMVKKEYHKDFTVDEDGKWVLQGWKGRILF 696
                        *********************************************************************888******************** PP

               GRAS 369 svSaW 373
                        ++S+W
  Vang0010ss01460.1 697 ALSCW 701
                        ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.8308682IPR005202Transcription factor GRAS
PfamPF035141.1E-112336701IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MLSMDSLLDN FPGSVNGFIS ENDSVSLFTN QNRVSEFKLD DSSVSVFTNP NGGREFKLDD  60
SRSPSESASD DAPSSGTSSD GEHTESTKLC NPMLRFISDI LMDEEDDLER KPCMLQDCLR  120
LQAAEKSFYD ALVHSYPSSP RQFNDNPDPD DNFGGTTSSE SYGSYTTDHS CESDKFNGAG  180
DFESYLLQRS LHNSPEHAYV TPDLIREAQA GFQFSNGAWN LIQSQNKAGV IEESVTRTGK  240
GSREKRSHLM KDDVSHEEEE RSNKLSAVYS DDSESCSMFD EVLLCNDGKS PAFCKSDREP  300
SSLQLADSGG SNGKKTRSKK GSNKGKNART TVDLWTLLTQ CAQAVASFDP RTANEILKQI  360
RQHSSPLGDG LQRLAHYFAD GLETRLAAGT PKFMLFQSAS AADMLKAYRV YVTSSPFHWM  420
SFFMANRTIL KFTQSESSIH IIDFGISYGF QWPCLIQRLS QRPGGPPKIR ITGIDFPQSG  480
FRPAERVEET GRRLEKYCKR FGVPFEYNCL AQKWETIRLE DLKLDRSEVT VVNCMYRLKN  540
LSDETVTVDC PRDAVLRLIR RINPTIFMHG VGNGTYNAPF FLTRFREALF HFSALFDMFE  600
ANVPREDPSR LMFEKGLFGR DAINVIACEG AERVERPETY KQWHVRNQRA RFKQLSLNRD  660
LVNKVKEMVK KEYHKDFTVD EDGKWVLQGW KGRILFALSC WVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4834070325380Protein SCARECROW
5b3h_A1e-4834070324379Protein SCARECROW
5b3h_D1e-4834070324379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss01460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406325.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9XE581e-180SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0L9T6I10.0A0A0L9T6I1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SD300.0A0A0S3SD30_PHAAN; Uncharacterized protein
STRINGXP_007132053.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]