PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0010ss01000.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

AP2

Protein Properties

Length: 554aa MW: 61121 Da PI: 6.1608

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0010ss01000.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	21.7	4.9e-07	159	198	1	35
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgk 35 s y+GV++++++gr++A+++d + g ++ ++++lgk Vang0010ss01000.1 159 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGK 198 57*****************665564477446***98 PP
2	AP2	26.5	1.6e-08	280	323	12	55
AP2 12 rgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r+ +vA Ir + g +k +lg+f t+eeAa+a++ a+ k++g Vang0010ss01000.1 280 RQEFVAAIRRiGRVAG-NKDLYLGTFSTEEEAAEAYDIAAIKFRG 323 7889999999554433.6************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.58E-16	159	266	No hit	No description
SMART	SM00380	2.0E-18	160	270	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.527	160	331	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-5	161	172	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-7	233	266	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.7E-7	235	265	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-5	246	266	IPR001471	AP2/ERF domain
SMART	SM00380	6.8E-15	275	337	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.8E-13	281	332	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-11	283	333	IPR016177	DNA-binding domain
CDD	cd00018	6.68E-16	289	333	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000723	Biological Process	telomere maintenance
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007389	Biological Process	pattern specification process
GO:0010073	Biological Process	meristem maintenance
GO:0010449	Biological Process	root meristem growth
GO:0019827	Biological Process	stem cell population maintenance
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MLKCSFLSPF SSSIVLSLEV ERLGRYKLFI ARTLDAAVFD LLKDWNLINT HSSNEVPKVA 60 DFLGVSKSEN QSELAALNEI QSNDSDYLFT NNSLVPLQNP VVDTPSNEYQ ENANSNLQSL 120 TLSMGSGKDS TCETSGENST NTVEAAPRRT LDTFGQRTSI YRGVTRHRWT GRYEAHLWDN 180 SCRREGQSRK GRQVYLGKCF HFSLFSSPFS FSKFLEVENQ TTKCIVFLLL FIMSGGYDKE 240 EKAARAYDLA ALKYWGTSTT TNFPISNYEK ELDEMKHMTR QEFVAAIRRI GRVAGNKDLY 300 LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKAI LESNTLPIGG GAAKRLKEAQ 360 ALESSRKREE MIALGSSTFQ YGTSSSSRLH AYPLMQHHQF EQPQPLLTLQ NHDISSHFSH 420 QDPLHQGYIQ TQLQLHQQSG VSSYLQNNPQ FYGGYLQNHP ALLQGMMNMG SSSSSSVLEN 480 NNNNNSSVGG FAAGSGFGMA SNPSSGNAVG AAEELGLVKV DYDMPAGGYG GWSAGAAESM 540 QTSNGGVFTM WNE*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MLKCSFLSPF SSSIVLSLEV ERLGRYKLFI ARTLDAAVFD LLKDWNLINT HSSNEVPKVA  60
DFLGVSKSEN QSELAALNEI QSNDSDYLFT NNSLVPLQNP VVDTPSNEYQ ENANSNLQSL  120
TLSMGSGKDS TCETSGENST NTVEAAPRRT LDTFGQRTSI YRGVTRHRWT GRYEAHLWDN  180
SCRREGQSRK GRQVYLGKCF HFSLFSSPFS FSKFLEVENQ TTKCIVFLLL FIMSGGYDKE  240
EKAARAYDLA ALKYWGTSTT TNFPISNYEK ELDEMKHMTR QEFVAAIRRI GRVAGNKDLY  300
LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKAI LESNTLPIGG GAAKRLKEAQ  360
ALESSRKREE MIALGSSTFQ YGTSSSSRLH AYPLMQHHQF EQPQPLLTLQ NHDISSHFSH  420
QDPLHQGYIQ TQLQLHQQSG VSSYLQNNPQ FYGGYLQNHP ALLQGMMNMG SSSSSSVLEN  480
NNNNNSSVGG FAAGSGFGMA SNPSSGNAVG AAEELGLVKV DYDMPAGGYG GWSAGAAESM  540
QTSNGGVFTM WNE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269\|PubMed:15454085, ECO:0000269\|PubMed:15635403, ECO:0000269\|PubMed:16424342, ECO:0000269\|PubMed:20190735}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0010ss01000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin accumulation. {ECO:0000269\|PubMed:15454085}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014493562.1	0.0	AP2-like ethylene-responsive transcription factor PLT2
Refseq	XP_022634123.1	0.0	AP2-like ethylene-responsive transcription factor PLT2
Swissprot	Q5YGP7	1e-172	PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBL	A0A1S3TIH3	0.0	A0A1S3TIH3_VIGRR; AP2-like ethylene-responsive transcription factor PLT2
STRING	XP_007131997.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4942	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	1e-153	AP2 family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lee DK,Sieburth LE The bps signal: embryonic arrest from an auxin-independent mechanism in bypass triple mutants. Plant Signal Behav, 2012. 7(6): p. 698-700 [PMID:22580686] Hong LW,Yan DW,Liu WC,Chen HG,Lu YT TIME FOR COFFEE controls root meristem size by changes in auxin accumulation in Arabidopsis. J. Exp. Bot., 2014. 65(1): p. 275-86 [PMID:24277277] Tian H,Jia Y,Niu T,Yu Q,Ding Z The key players of the primary root growth and development also function in lateral roots in Arabidopsis. Plant Cell Rep., 2014. 33(5): p. 745-53 [PMID:24504658] Zhao Q, et al. Sulfur nutrient availability regulates root elongation by affecting root indole-3-acetic acid levels and the stem cell niche. J Integr Plant Biol, 2014. 56(12): p. 1151-63 [PMID:24831283] Huang JB, et al. ROP3 GTPase contributes to polar auxin transport and auxin responses and is important for embryogenesis and seedling growth in Arabidopsis. Plant Cell, 2014. 26(9): p. 3501-18 [PMID:25217509] Yang S, et al. The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance. Plant Cell, 2015. 27(6): p. 1670-80 [PMID:25991732] Jia Y, et al. The Arabidopsis thaliana elongator complex subunit 2 epigenetically affects root development. J. Exp. Bot., 2015. 66(15): p. 4631-42 [PMID:25998905] Zhang M, et al. A tetratricopeptide repeat domain-containing protein SSR1 located in mitochondria is involved in root development and auxin polar transport in Arabidopsis. Plant J., 2015. 83(4): p. 582-99 [PMID:26072661] Shinohara H,Mori A,Yasue N,Sumida K,Matsubayashi Y Identification of three LRR-RKs involved in perception of root meristem growth factor in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(14): p. 3897-902 [PMID:27001831] Ou Y, et al. RGF1 INSENSITIVE 1 to 5, a group of LRR receptor-like kinases, are essential for the perception of root meristem growth factor 1 in Arabidopsis thaliana. Cell Res., 2016. 26(6): p. 686-98 [PMID:27229312] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis . J Integr Plant Biol, 2017. 59(1): p. 30-43 [PMID:28074634] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]