PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss00010.1
Common NameLR48_Vigan08g172700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 395aa    MW: 43425.5 Da    PI: 7.7412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-10198245455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Vang0010ss00010.1 198 SHSLAERVRREKISERMKYLQDLVPGC----NKIAGKAGMLDEIINYVQSLQ 245
                        8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.63E-10192249No hitNo description
SuperFamilySSF474591.01E-16192264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17194265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.364194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-7198245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-9200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MLHCLNGSGN LGASCSDMTV LERQREATTK WQHHHHDNHP PYYSATEFHV NLVFSSSSNN  60
LPQSQGLVMA RERDDSALSQ VLAHSLKPDP GLCPELDTGF GSSFGFLHKE NDKKRKALNY  120
KVAAESDNKD KRVKVSGEEG ESRVTNQTSN RNGKSNANKN NRETSADSSK NNSKGSEVQN  180
QKREYIHVRA RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKIAGK AGMLDEIINY  240
VQSLQRQVEF LSMKLAAVNP SIDELFAREA FPSCGQGLPN IGMVSDMSMC NNPSYVQLNS  300
TQQLVSCCGG LINNVGMSPS NMGLRRNIST THVPLPEAFI DSSCFTQILP SSNWDGDFQS  360
LYNVACDQGR AGAASFPSQP FTGVVETSNP KMEM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432408.10.0PREDICTED: transcription factor bHLH63-like
TrEMBLA0A0L9V7460.0A0A0L9V746_PHAAN; Uncharacterized protein
STRINGXP_007131827.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-55cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]