PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0005s01920.4 | ||||||||
Common Name | LR48_Vigan06g136500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 552aa MW: 58927.2 Da PI: 5.7112 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 6.9e-09 | 367 | 415 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Vang0005s01920.4 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.2E-17 | 362 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.18E-11 | 362 | 419 | No hit | No description |
PROSITE profile | PS50888 | 15.485 | 364 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 365 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-6 | 367 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 370 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MDMSDKEKFE VDRNEDPMGY SSGMHSDWRF GGANLANSSA GLVAMGNSVN ASRGDLIGSS 60 SCSSASMVDS FGASYWDNTT GSRNLGFCDF NVHNNGGSSN TAGIRKDGFG FGRVAQVHHG 120 TLEMAWSPAN SMLQNGPGLF PHSLSQFPTD SGFIERAARF SCFSGGNFTD MVNSYGIAQS 180 TGVYGARDAI AGHGLKSVTE GQSQGGDMNV IEATKDLSPS VEHLASKGSP LKSDKRSEGH 240 ITSQDDGKLS LVRPANESDR AESSDDGAGQ DDSPLMEGAS GEPSIKGLNS KKRKRSGLDA 300 DNGKGNGAPE IPNDAAQDNS DNQQMVGHQP IPATKSSGKN AKLGSQASDP PKEEYIHVRA 360 RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF 420 LSMKLATVNP RLDFNIEGLL SKDILQHRPG PSSGLGFPLD ISMAFPPLHP SQPGLIHPII 480 PNMANSADIL QRNIHQQLAP LNGELKEPNQ LSDVWDDELH NVVQMSFATT APLSNENVDG 540 TVSASQMKVE L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 290 | 295 | KKRKRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0005s01920.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427653.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
Refseq | XP_017427654.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
Refseq | XP_017427656.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
TrEMBL | A0A0L9UU55 | 0.0 | A0A0L9UU55_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA01G09400.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-104 | bHLH family protein |
Publications ? help Back to Top | |||
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