PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0005s01920.2

Common Name

LR48_Vigan06g136500

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 549aa MW: 58758.1 Da PI: 5.844

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0005s01920.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.8e-09	367	415	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Vang0005s01920.2 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-17	362	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.16E-11	362	419	No hit	No description
PROSITE profile	PS50888	15.485	364	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-16	365	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-6	367	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	370	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MDMSDKEKFE VDRNEDPMGY SSGMHSDWRF GGANLANSSA GLVAMGNSVN ASRGDLIGSS 60 SCSSASMVDS FGASYWDNTT GSRNLGFCDF NVHNNGGSSN TAGIRKDGFG FGRVAQVHHG 120 TLEMAWSPAN SMLQNGPGLF PHSLSQFPTD SGFIERAARF SCFSGGNFTD MVNSYGIAQS 180 TGVYGARDAI AGHGLKSVTE GQSQGGDMNV IEATKDLSPS VEHLASKGSP LKSDKRSEGH 240 ITSQDDGKLS LVRPANESDR AESSDDGAGQ DDSPLMEGAS GEPSIKGLNS KKRKRSGLDA 300 DNGKGNGAPE IPNDAAQDNS DNQQMVGHQP IPATKSSGKN AKLGSQASDP PKEEYIHVRA 360 RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF 420 LSMKLATVNP RLDFNIEGLL SKDILQHRPG PSSGLGFPLD ISMAFPPLHP SQPGLIHPII 480 PNMANSADIL QRNIHQQLAP LNGELKEPNQ LSDVWDDELH NVVQMSFATT APLSNENVDG 540 LLRAVTYST

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MDMSDKEKFE VDRNEDPMGY SSGMHSDWRF GGANLANSSA GLVAMGNSVN ASRGDLIGSS  60
SCSSASMVDS FGASYWDNTT GSRNLGFCDF NVHNNGGSSN TAGIRKDGFG FGRVAQVHHG  120
TLEMAWSPAN SMLQNGPGLF PHSLSQFPTD SGFIERAARF SCFSGGNFTD MVNSYGIAQS  180
TGVYGARDAI AGHGLKSVTE GQSQGGDMNV IEATKDLSPS VEHLASKGSP LKSDKRSEGH  240
ITSQDDGKLS LVRPANESDR AESSDDGAGQ DDSPLMEGAS GEPSIKGLNS KKRKRSGLDA  300
DNGKGNGAPE IPNDAAQDNS DNQQMVGHQP IPATKSSGKN AKLGSQASDP PKEEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RLDFNIEGLL SKDILQHRPG PSSGLGFPLD ISMAFPPLHP SQPGLIHPII  480
PNMANSADIL QRNIHQQLAP LNGELKEPNQ LSDVWDDELH NVVQMSFATT APLSNENVDG  540
LLRAVTYST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	295	KKRKRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0005s01920.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017427653.1	0.0	PREDICTED: transcription factor bHLH49
Refseq	XP_017427654.1	0.0	PREDICTED: transcription factor bHLH49
Refseq	XP_017427656.1	0.0	PREDICTED: transcription factor bHLH49
TrEMBL	A0A0L9UU55	0.0	A0A0L9UU55_PHAAN; Uncharacterized protein
STRING	GLYMA01G09400.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-104	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]