PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s01870.1
Common NameLR48_Vigan06g136400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 195aa    MW: 22336.1 Da    PI: 5.9329
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s01870.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.24.9e-1583140562
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN+ L+++l+++++  +++ +e
  Vang0005s01870.1  83 RKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHMSESHDRVLQE 140
                       688***************************************9999999888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.1E-1579143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.85281144IPR004827Basic-leucine zipper domain
PfamPF001705.3E-1383141IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.64E-1383133No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-1283156No hitNo description
CDDcd147025.34E-2184135No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVPSEVRGVH YLAPENPFLV PPNFGLVQSD IPNLHMNTLL SNFPNCHFPH SGLDFLAPPS  60
SYLSSNSTSD EADEIHFNII DERKHRRMIS NRESARRSRM RKQKHLDELW SQVVRLRTEN  120
HNLIDKLNHM SESHDRVLQE NTRLKEEASD LRQMLADMQI GTSFACAMEE LEDLPCNKPD  180
PSNQSITPAD MIHE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0005s01870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426837.11e-142PREDICTED: basic leucine zipper 43
SwissprotQ9FMC25e-37BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0L9UTJ41e-141A0A0L9UTJ4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T1F41e-141A0A0S3T1F4_PHAAN; Uncharacterized protein
STRINGXP_007157937.11e-127(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-44basic leucine-zipper 42
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]