PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0005s01170.2 | ||||||||
Common Name | LR48_Vigan06g129300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 296aa MW: 32930.6 Da PI: 7.1867 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 115 | 134 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Vang0005s01170.2 115 FSCTVCNKMFNRFNNMQMHM 134 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 200 | 222 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Vang0005s01170.2 200 FGCRKCGKPFAVRGDWRTHEKNC 222 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.8E-5 | 96 | 136 | No hit | No description |
PROSITE profile | PS50157 | 9.889 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.6E-5 | 115 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.09E-5 | 183 | 220 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 186 | 220 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
LEPHHHQEPV DEASISLSLG PPGQLHHHPK GTSSSSSSSN LPSTLHHYQH NPTSDDQRGV 60 TVALHIGLPN PTTSPNSPIT TTTTTKPDLH LASAPTQGQY WIPSPAQILI GPTQFSCTVC 120 NKMFNRFNNM QMHMWGHGSQ YRKGPESLRG AKPASSMLRL PCYCCAEGCK NNIDHPRSRP 180 LKDFRTLQTH YKRKHGAKPF GCRKCGKPFA VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL 240 KDHVRAFGDG HAPHTVESCD QIGEDDLFGD EDEEELDLED DDEGYNSNEV VFGFN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0005s01170.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426956.1 | 0.0 | PREDICTED: zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-119 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A0L9UTT8 | 0.0 | A0A0L9UTT8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T1T2 | 0.0 | A0A0S3T1T2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153349.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-117 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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