PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0005s01170.1 | ||||||||
Common Name | LR48_Vigan06g129300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 297aa MW: 33137.9 Da PI: 7.181 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 116 | 135 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Vang0005s01170.1 116 FSCTVCNKMFNRFNNMQMHM 135 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 201 | 223 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Vang0005s01170.1 201 FGCRKCGKPFAVRGDWRTHEKNC 223 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.43E-5 | 90 | 137 | No hit | No description |
PROSITE profile | PS50157 | 9.889 | 116 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.6E-5 | 116 | 135 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 118 | 138 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.13E-5 | 184 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 187 | 221 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MQTHPFSYIS SCPGSTAFLE PHHHQEPVDE ASISLSLGPP GQLHHHPKGT SSSSSSSNLP 60 STLHHYQHNP TSDDQRGVTV ALHIGLPNPT TSPNTPTQGQ YWIPSPAQIL IGPTQFSCTV 120 CNKMFNRFNN MQMHMWGHGS QYRKGPESLR GAKPASSMLR LPCYCCAEGC KNNIDHPRSR 180 PLKDFRTLQT HYKRKHGAKP FGCRKCGKPF AVRGDWRTHE KNCGKLWFCI CGSDFKHKRS 240 LKDHVRAFGD GHAPHTVESC DQIGEDDLFG DEDEEELDLE DDDEGYNSNE VVFGFN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0005s01170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426956.1 | 0.0 | PREDICTED: zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-119 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A0L9UTT8 | 0.0 | A0A0L9UTT8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T1T2 | 0.0 | A0A0S3T1T2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153349.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-118 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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