PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0005s01160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 30719.6 Da PI: 10.5214 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.9 | 8.2e-32 | 120 | 175 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQk+Rl+ Vang0005s01160.1 120 KQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLH 175 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.094 | 117 | 177 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 117 | 178 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-18 | 117 | 178 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-27 | 120 | 175 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-7 | 122 | 172 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MLPRKMGFRE YIEALEEERR KIQVFPKELP LSSVQLWNSN PPPTKEDVPR KANVVEVKRN 60 GGAFQPFQRE EKSAIVNGKA DNYASAIGKT PSSPPVPATS STGPITIDSR KEEKGQTQRK 120 QRRCWSQELH KRFLHALQQL GGADSATPKQ IRELMKVDGL TNDEVKSHLQ KFRLHTRRSP 180 IIHNNGNSQA APLFLVGKIF VQPPEYGAVA TSTASGGELT TVTAPTGIYA PVAAHPPLVT 240 NTPIMNHSRS QERPNYNNNN SAQSNSPASS SSTHTITTT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0005s01160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426139.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
TrEMBL | A0A0L9UT12 | 0.0 | A0A0L9UT12_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T190 | 0.0 | A0A0S3T190_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153350.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3918 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 3e-47 | G2-like family protein |