PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s00670.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 338aa    MW: 38749.2 Da    PI: 9.973
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s00670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.53.1e-5491341128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+v+yL +++++k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++r++ky++g r+nrat sgyWkatg+dk+++
  Vang0005s00670.1   9 LPPGFRFHPTDEELIVYYLSNQATSKPCPA-SIIPEVDIYKFDPWELPEKTDFGENEWYFFTPRERKYPNGVRPNRATVSGYWKATGTDKAIY 100
                       79****************************.89***************99999**************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s +++++g+kk Lvfy+g+ pkg ktdW+mheyrl
  Vang0005s00670.1 101 S-GSKHIGVKKALVFYRGKPPKGIKTDWIMHEYRL 134
                       *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-655161IPR003441NAC domain
PROSITE profilePS5100560.7019161IPR003441NAC domain
PfamPF023651.1E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEGRTSSVLP PGFRFHPTDE ELIVYYLSNQ ATSKPCPASI IPEVDIYKFD PWELPEKTDF  60
GENEWYFFTP RERKYPNGVR PNRATVSGYW KATGTDKAIY SGSKHIGVKK ALVFYRGKPP  120
KGIKTDWIMH EYRLIGSRRQ TNRQIGSMRL DDWVLCRIYK KKNMGKSLEA KEDYPIAQIN  180
LIPPNNETQQ EVMKFPRTSS LTHLLDMDYL GPISHILSDA SYTSTFDFQL NTANGGIDPF  240
IKPQPLEIPN SLYAADSGKY QRPAKLGCKK ATSHPRKGRK QSSERTSFEI QSKIEKRVKQ  300
SNEESNVPKQ DDIVPPKRKL KVWKIEKGRE EVKDEKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-69516313167NO APICAL MERISTEM PROTEIN
1ut4_B4e-69516313167NO APICAL MERISTEM PROTEIN
1ut7_A4e-69516313167NO APICAL MERISTEM PROTEIN
1ut7_B4e-69516313167NO APICAL MERISTEM PROTEIN
3swm_A5e-69516316170NAC domain-containing protein 19
3swm_B5e-69516316170NAC domain-containing protein 19
3swm_C5e-69516316170NAC domain-containing protein 19
3swm_D5e-69516316170NAC domain-containing protein 19
3swp_A5e-69516316170NAC domain-containing protein 19
3swp_B5e-69516316170NAC domain-containing protein 19
3swp_C5e-69516316170NAC domain-containing protein 19
3swp_D5e-69516316170NAC domain-containing protein 19
4dul_A4e-69516313167NAC domain-containing protein 19
4dul_B4e-69516313167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0005s00670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0287690.0DQ028769.1 Glycine max NAC domain protein NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427630.10.0PREDICTED: NAC transcription factor 29-like
SwissprotK4BWV21e-116NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A0L9USX00.0A0A0L9USX0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T1J60.0A0A0S3T1J6_PHAAN; Uncharacterized protein
STRINGGLYMA02G12220.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-115NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]