PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0005s00080.1 | ||||||||
Common Name | LR48_Vigan09g177500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 452aa MW: 50048.6 Da PI: 8.8547 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00032 | 396 | 418 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k F++ L H r+H Vang0005s00080.1 396 HECPICNKIFRSGQALGGHKRSH 418 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.41E-6 | 7 | 35 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 8 | 33 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.138 | 11 | 38 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-6 | 11 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 11 | 33 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 13 | 33 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.9 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.38E-8 | 59 | 80 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-5 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.38E-8 | 391 | 418 | No hit | No description |
Pfam | PF13912 | 2.0E-11 | 395 | 418 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.702 | 396 | 418 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 396 | 418 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 398 | 418 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MSYQSMEERK FVCKYCSKRF PCGKSLGGHI RTHMMSENSA LGNAERSNAT NGILQLEKFC 60 KECGKGFLSL KALCGHMACH SEKDKGGNRF ESSSSGFAEK QKLAMDSQSD TETSTPRRSK 120 RKRFKTLSNS NNQAQSSVSE VEQGQEEVAR CLMMLSKDSS YKGRFSLFTE SSDNNSVVLE 180 VKSPSPDTKV TMMNSDGKNF VSGAYVEKKL EQSKEFKYAE VGYDSDNSDS GYFRYGPKEV 240 DSTDSNNGNF KNEVQSSKVG CFSGFEDYDV ESRKVPSRSV EFKKFVVENW ENDRQDGGAA 300 RKFDSKKSKK PNYDSLGQNL VRVSSRKMGN GSANDKVNKY ECLTSERDNG YDDSAYESDE 360 NSTDSDSYPA PKAYSKRNLS GQKGKKKLKS KKSKAHECPI CNKIFRSGQA LGGHKRSHFI 420 GGSEENTLVI RPGAAAVPCL IDLNLPAPVD E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | RRSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0005s00080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435467.1 | 0.0 | PREDICTED: dentin sialophosphoprotein-like | ||||
TrEMBL | A0A0L9VDH7 | 0.0 | A0A0L9VDH7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T1U5 | 0.0 | A0A0S3T1U5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157592.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1101 | 30 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-75 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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