PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0004ss01230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 120aa MW: 13748.5 Da PI: 4.957 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 35 | 4.4e-11 | 26 | 109 | 9 | 91 |
GAGA_bind 9 rnkgyye.pa.aslkenlglqlmssiaerdaki.rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91 r + +++ ++ ++l +++++ s++aer+a i + + a +++k+a+a++d+a ++rd+al +r++a++e+dn l++l+ ++ + Vang0004ss01230.1 26 RIHEFHQvKEpNALV--MNKKIRSIMAERQAVIlKLELEAAISEKNALAAQDEAIQERDEALVQRDNAILEQDNSLTTLQSQNSYV 109 333333342236677..99************9964444567888999********************************9966543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 2.2E-6 | 30 | 104 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MEDCRQNEND IHKMEYYRGP HFMVNRIHEF HQVKEPNALV MNKKIRSIMA ERQAVILKLE 60 LEAAISEKNA LAAQDEAIQE RDEALVQRDN AILEQDNSLT TLQSQNSYVT FPFGSGIQC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0004ss01230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-149 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507568.1 | 3e-61 | protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_014507569.1 | 3e-61 | protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A0L9UUL1 | 2e-70 | A0A0L9UUL1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159983.1 | 9e-54 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 7e-24 | basic pentacysteine 4 |