PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0004ss01090.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 301aa    MW: 33126.4 Da    PI: 7.3468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0004ss01090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14111157354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Vang0004ss01090.1 111 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 157
                        79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11111157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15112166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-15112164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-5121160No hitNo description
CDDcd048734.53E-6193270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MQPWSMPPVH SFNPGPVHYN HINTNPVRDH HDQTFIVPPT PSPYASFFSR RVPSLQFAYE  60
SPSSDLHHLR IISDTLGPMV QPGSAPFGLQ AELGKMTAQE IMEAKALAAS KSHSEAERRR  120
RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLIAESSAV PTEADELTVD  180
AADEDGKFVI KASLCCEDRS DLLPDLVKTL KALKLRTLKA EITSLGGRVK NVLVIAGDEE  240
SSNTNGEQSI QQQQQQYCIT SIQEALKAVM EKSGGGDESA SGIVKRQRTN NTNFLEQRSL  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0004ss01090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426984.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-104BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0S3T1X80.0A0A0S3T1X8_PHAAN; Uncharacterized protein
STRINGXP_007153337.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]