PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0004ss00730.1 | ||||||||
Common Name | LR48_Vigan1340s000600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 23558.3 Da PI: 7.7241 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Vang0004ss00730.1 59 FSCNYCRRKFFSSQALGGHQNAH 81 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.55E-6 | 57 | 87 | No hit | No description |
PROSITE profile | PS50157 | 11.302 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDNSSSSCLT KTDPDSGSLS LDLTLKFNHS DEEFKGESHT NFEVGGETHP SALAIPRVFS 60 CNYCRRKFFS SQALGGHQNA HKRERTMAKR ALRMGILTER YTSLASLPLH GSSFRSLGLE 120 AHAAIHQEQV QSLRVPEIGP AAKFEKDYFR TPIFVEDDDA GLFWPGSFRK REGRGGFGVN 180 LSHDAHAFNS STRFVETAPP AQTSATPDLT LRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0004ss00730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411465.1 | 1e-157 | PREDICTED: zinc finger protein 4-like | ||||
Refseq | XP_017411466.1 | 1e-157 | PREDICTED: zinc finger protein 4-like | ||||
Swissprot | Q39263 | 4e-36 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A0L9TIY8 | 1e-156 | A0A0L9TIY8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T0Z9 | 1e-156 | A0A0S3T0Z9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153194.1 | 1e-112 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-38 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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