PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0004ss00480.1
Common NameLR48_Vigan06g148200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 281aa    MW: 32047.1 Da    PI: 5.1596
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0004ss00480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_156.37.2e-18193253161
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                        e e++rer++q+NRe+ArrsR RK+ e+eeL++k++ L+ eN++L ++l++l++e+ +  +
  Vang0004ss00480.1 193 EDEIRRERKRQSNRESARRSRMRKERECEELQKKMEILKDENSMLTQRLKSLSEECLEICN 253
                        6799****************************************************87655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-14189249No hitNo description
PfamPF001701.9E-15193250IPR004827Basic-leucine zipper domain
SMARTSM003384.6E-16193257IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.047195247IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-10196251No hitNo description
CDDcd147023.02E-16198248No hitNo description
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGTQKSNMFD TAYNYLVPED AYNNSASTPI PFLYQHAAGY MPLYMWPNQA NSTVLQSNVL  60
QDPMKLSNKP TVSEDAVLAF SEIVHRTFGE QNLNSIKKCA RNLQPKSLIP KESRGDRSKS  120
SILKNKDRVL CSEAYGNKGS LHEDLVTAND FPSTKKQDCN LMLENASSIQ LNQDLETGLD  180
AIGTNTELVK LEEDEIRRER KRQSNRESAR RSRMRKEREC EELQKKMEIL KDENSMLTQR  240
LKSLSEECLE ICNENDAIEE ELVNMYGTES ISYLLDMKPR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209216RRSRMRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0004ss00480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-92AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427175.10.0PREDICTED: G-box-binding factor 1-like isoform X2
TrEMBLA0A0L9UTW70.0A0A0L9UTW7_PHAAN; Uncharacterized protein
STRINGGLYMA20G01030.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149401013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.23e-23G-box binding factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]